Dear Rasmus,
I could return to the original state of my project by loading the backup file
(cdmbf.xml.bak). However i had to substitute in the script the names of other
files to backup file names: MolSystem.xml.bak, Molecule.xml.bak, Nmr.xml.bak
and Analysis.xml.bak, which were in the ccp and in the ccpnmr directories
inside my project.
I found out that I have some aminoacids wrong in my sequence and I wanted to
change them. But when I changed Lys58 to Glu, in the EditMoleculeTemplate
menu, it didnt update this change in the BrowseAtoms popup! This only
happened when I created a new chain from template in the EditMolecularSystems
menu. I tried this but then the project somehow gets messed up, and analysis
can not open it anymore. I guess this is what happened last time.
Which would be the easiest way to modify the sequence of my protein and keep
the assignments which are already done?
best wishes,
roberto
On Friday 26 January 2007 13:41, Rasmus Fogh wrote:
> Dear Roberto,
>
> Looking at your files, but still no obvious answer.
>
> Two questions:
>
> Is you Molsystem.xml file at
> /home/roberto/nmr/felipe/analysis/ctdmbf/ccp/MolSystem.xml
> where teh files say it should?
>
> Is what you sent the complete error trace, and if not could you send all
> of it? You often get a very ling trace interspersed with printed
> statements, reflecting that a file load may trigger another file load
> (etc.) and the error may be deep in the nesting.
>
> Yours,
>
> Rasmus
>
> ---------------------------------------------------------------------------
> Dr. Rasmus H. Fogh Email: [log in to unmask]
> Dept. of Biochemistry, University of Cambridge,
> 80 Tennis Court Road, Cambridge CB2 1GA, UK. FAX (01223)766002
>
> On Wed, 24 Jan 2007, Roberto Kopke Salinas wrote:
> > Dear All:
> > Since I added another chain in my molecule system (chain C), I have not
> > been able to load my project. Analysis gives the error message below.
> > Does anyone has an idea of where the problem is?
> >
> > roberto
> >
> > >>> last xml element read:
> >
> > </_StorageUnit>
> >
> >
> > parser state was:
> > checking object validity
> >
> > ERROR loading xml ccp.molecule.MolSystem ccp/MolSystem.xml
> > Error dereferencing link to Atom. key was:
> > ['MS1', 'A', 1, 'C']
> > Error dereferencing atoms for object ccp.nmr.Nmr.AtomSet with (partial)
> > key : ['auto1168520119.92', 1]
> >
> > --
> > Roberto Kopke Salinas
> > Instituto de Química
> > Universidade de São Paulo
> > Av Prof Lineu Prestes 748
> > 05508-900 São Paulo SP Brasil
> > Tel: #55-11-3091-3312 r. 110
--
Roberto Kopke Salinas
Instituto de Química
Universidade de São Paulo
Av Prof Lineu Prestes 748
05508-900 São Paulo SP Brasil
Tel: #55-11-3091-3312 r. 110
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