Hello,
Does anyone have a quick recipe for getting "analysis" up and running on a
Debian (or presumably ubuntu) system?
I've had a few tries at installing "analysis" on a debian system,
without full success. Couldn't get installCode.py to work (with
pre-existing installed tcl/tk 8.3):
"
could not find required files include/[tcl.h] and (lib or
lib32)/[tclConfig.sh] in /usr
"
In Debian these seem to be in sub-sub directories
(/usr/include/tcl8.3/tcl.h & /usr/lib/tcl8.3/tclConfig.sh)
but couldn't figure out what to type in the installCode.py tcl path
prompt to have that fly.
So tried the long way around, going into the ccpnmr/ccpnmr1.0/c/
directory, editing environment.txt, make, make links, creating the
ccpnmr/bin/ files, and ended up with something that displays the menu
bar on running "analysis", and will create a new project, but crashes
with a segmentation fault every time one tries to open a spectrum (at
least with the hsqc spectrum included in the tutorial tarball):
"
CCPNMR Analysis Version 1.0. Release 13 (Copyright 2003-2006 CCPN)
Distribution created Mon Jan 22 11:31:05 2007
If you use this software, please quote the following reference:
Wim F. Vranken, Wayne Boucher, Tim J. Stevens, Rasmus H. Fogh, Anne
Pajon, Miguel Llinas, Eldon L. Ulrich, John L. Markley, John Ionides
and Ernest D. Laue (2005). The CCPN Data Model for NMR Spectroscopy:
Development of a Software Pipeline. Proteins 59, 687 - 696.
>>> finished opening spectrum Hsqc 5.spc
/usr/local/ccpnmr/bin/analysis: line 2: 32710 Segmentation fault
python -i -O
$CCPNMR_TOP_DIR/ccpnmr1.0/python/ccpnmr/analysis/AnalysisGui.py $1 $2 $3
"
Am using python 2.3.5, & tcl/tk 8.3.
Thanks in advance for any suggestions!
- Mark
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