Dear SPM users,
Some years ago I developed a modified version of the SPM99 PET
interface (spm_spm_ui.m) for specifying the design and image file
locations in a PET study.
Since then a number of people have enquired about versions for SPM2 and SPM5.
I have now reworked the relevant codes and have put documentation and
downloadable codes for SPM99, SPM2 and SPM5 on the MRC CBU Imaging
Wiki at http://imaging.mrc-cbu.cam.ac.uk/imaging/PetModelAutomation.
Let me know if you have any problems or comments.
Ian
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Ian Nimmo-Smith
MRC Cognition and Brain Sciences Unit
15 Chaucer Road
Cambridge CB2 2EF
+44 (0) 1223 355294 x 710
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From the documentation:
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SPM2 PET analyses can be automated using the CBU CSV modfications to
the standard interface for setting up the required SPM statistical design.
This utility is a modified version of the SPM2 PET interface
(spm_spm_ui.m) for specifying the design and image file locations in
a PET study.
The utility automates the stages of specifying group, subject,
condition, replicate and covariate information by preparing a text
file in advance and then telling SPM2 to read from this file.
Alternatively, you can use the utility to create a re-usable text
file named design.csv in the requisite format after you have set up a
design in the standard point-click-type interface.
I have found this facility useful for running multiple 'what if'
analyses - seeing what the effect is of dropping a subject, or a
condition, or adding an extra covariate, etc. etc., at the cost of a
few edits to a text file.
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