Hi,
I have run the command "avwswapdim image.hdr z -x -y image_new_orient.hdr" on 2
different linux boxes, and it produces 2 different images. That is, the outputs
are mirror images of each other. I'm not quite sure why this would occur.
One of the boxes is running a 64 bit code that Mark Jenkinson kindly installed
for us in Charlestown, MA. The other box is running a 32 bit code that was just
recently updated with avwstats++, betpremask, ttologp. Would any of these latter
three programs affect avwswapdim?
Thank you again for all your help with these issues.
-Saul
I have run a FSL command on two different linux boxes and have gotten 2
different results from that command. In both cases I have sourced the same nmr
dev environment. I've done this several times this morning, switching back and
forth between the machines, so I don't think it was just an unlucky change in
the dev environment between working on one machine and then the other. Below you
will find the command lines that I used on elvin and sushi. And then attached
are the images. Note that one is the mirror image of the other. I'm not sure why
this would occur, and what could cause differences between the two machines? Any
help would be appreciated.
Thanks.
-Saul
ELVIN COMMAND LINES:
elvin:smiller[81] cd /space/sushi/1/users/maija/fsl/MCI/PPG06
elvin:smiller[82] nmrdev
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /usr/local/freesurfer/dev
FSFAST_HOME /usr/local/freesurfer/dev/fsfast
SUBJECTS_DIR /autofs/space/sake_003/users/inverse/subjects
FUNCTIONALS_DIR /usr/local/freesurfer/dev/sessions
MINC_BIN_DIR /usr/local/freesurfer/dev/apps/mni/bin
MINC_LIB_DIR /usr/local/freesurfer/dev/apps/mni/lib
PERL5LIB /usr/local/freesurfer/dev/apps/mni/lib/perl5/5.8.0
GSL_DIR /usr/local/freesurfer/dev/lib/gsl
QTDIR /usr/local/freesurfer/dev/lib/qt
TCLLIBPATH /usr/local/freesurfer/dev/lib/tcltktixblt/lib
FSL_DIR /usr/local/freesurfer/dev/apps/fsl
[elvin:PPG06] (nmr-dev-env) avwswapdim na.nii z -x -y na_elvin
[elvin:PPG06] (nmr-dev-env) fslview na_elvin.hdr
SUSHI COMMAND LINES:
elvin:smiller[81] ssh sushi
smiller@sushi's password:
Last login: Fri Jan 20 10:29:06 2006 from elvin.nmr.mgh.harvard.edu
sushi:smiller[81] cd /space/sushi/1/users/maija/fsl/MCI/PPG06
sushi:smiller[82] nmrdev
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /usr/local/freesurfer/dev
FSFAST_HOME /usr/local/freesurfer/dev/fsfast
SUBJECTS_DIR /autofs/space/sake_003/users/inverse/subjects
FUNCTIONALS_DIR /usr/local/freesurfer/dev/sessions
MINC_BIN_DIR /usr/local/freesurfer/dev/apps/mni/bin
MINC_LIB_DIR /usr/local/freesurfer/dev/apps/mni/lib
PERL5LIB /usr/local/freesurfer/dev/apps/mni/lib/perl5/5.8.5
GSL_DIR /usr/local/freesurfer/dev/lib/gsl
QTDIR /usr/local/freesurfer/dev/lib/qt
TCLLIBPATH /usr/local/freesurfer/dev/lib/tcltktixblt/lib
FSL_DIR /usr/local/freesurfer/dev/apps/fsl
[sushi:PPG06] (nmr-dev-env) avwswapdim na.nii z -x -y na_sushi
[sushi:PPG06] (nmr-dev-env) fslview na_sushi.hdr
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