Hi
does anyone have experience using BET (in fsl) to extract mouse brains
from MR images?
BET does a good job in the central coronal slices of my 3D (isotropic)
volume, presumably where the spere originates, but then does not do so
well towards the front or back of the brain. It seems that that a higher
fractional intensity threshold (0.9), it basically cuts along the shape
of the sphere, at a lower (o.65), it takes too much of tissue outside the
brain, but still cuts off the cerebellum.
Thanks for your help!
Henryk
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