Mark,
thank you, it indeed works as expected.
I must confess the mistake was on my part. 'The smallest' typo in my script
caused a variable mis-specification and thus the 'Abort' error I was getting
(that's all the -v option printed to screen).
best
Martin
----- Original Message -----
From: "Mark Jenkinson" <[log in to unmask]>
To: <[log in to unmask]>
Sent: Tuesday, May 23, 2006 10:46 AM
Subject: Re: [FSL] Avwmeants & z/tstats
> Hi Martin,
>
> It is certainly possible. I just ran:
> avwmeants -i stats/zstat1 -o ~/tmp/testmeants.txt --showall
> in a feat directory (actually feeds/data/fmri.feat) and it worked fine.
> This is the standard version is FSL3.3.
>
> What is the exact command line you are using and what is the exact output?
> Can you also run it with the -v option and let me know what it says?
>
> All the best,
> Mark
>
>
>
> Martin M. Monti wrote:
>
>> Hi,
>> I was wondering whether it's possible to pull out a text file similar to
>> the avwmeants output but by using as an input a (NON thresholded) zstat
>> or tstat. My idea is to get a file with the 3 coordinates in the first
>> three columns, and one z/t score associated with each (just like
>> avwmeants with the option --showall would do). I tried avwmeants but all
>> I get is an "Aborted" message.
>> Is there a different usage, or some different tool I can use?
>> Thanks,
>> cheers
>> Martin
>>
>> --------------------------
>> "Upward, not Northward!" [Edwin Abbott - FlatLand]
>> I became insane, with long intervals of horrible sanity. [E.A. Poe]
>> Would you tell me, please, which way I ought to go from here? ''That
>> depends a good deal on where you want to get to.'' Said the Cat. I don't
>> much care where -- Said Alice. Then it doesn't matter which way you go,
>> said the Cat. [Lewis Carroll]
>> Che si trattasse di una gara? ..Un colpo il mondo e un colpo tu, a chi
>> stupiva un po' di piu'.. [Per Un Vecchio Bambino - Roberto Vecchioni]
>> --------------------------------------------
>> Martin M. Monti
>> Princeton University
>> Department of Psychology
>> Green Hall 3-S-8
>> (609) 258-5679
>> www.webmartin.net <http://www.webmartin.net>
>> --------------------------------------------
>
|