Thanks, Christian, ICA file is in the end
[Stella:~] sdebode% wc denoise.ica/melodic_mix
wc: denoise.ica/melodic_mix: open: No such file or directory
[Stella:~] sdebode% avwsize denoise
** ERROR: nifti_image_read(denoise): can't open header file
** ERROR: nifti_image_open(denoise): bad header info
Error: failed to open file denoise
ERROR: Could not open file
[Stella:Pryor/Pre_USC/Language] sdebode% ls -l *
-r-xr-xr-x 1 sdebode sdebode 348 24 Jul 14:28
Veronica2_0724_VocalGo.hdr
-r-xr-xr-x 1 sdebode sdebode 11272192 24 Jul 14:28
Veronica2_0724_VocalGo.img
Ver_Contrasts.feat:
total 39256
-rw-r--r-- 1 sdebode sdebode 348 24 Jul 18:55
cluster_mask_zstat1.hdr
-rw-r--r-- 1 sdebode sdebode 524288 24 Jul 18:55
cluster_mask_zstat1.img
-rw-r--r-- 1 sdebode sdebode 348 24 Jul 18:55
cluster_mask_zstat2.hdr
-rw-r--r-- 1 sdebode sdebode 524288 24 Jul 18:55
cluster_mask_zstat2.img
-rw-r--r-- 1 sdebode sdebode 348 24 Jul 18:55
cluster_mask_zstat3.hdr
-rw-r--r-- 1 sdebode sdebode 524288 24 Jul 18:55
cluster_mask_zstat3.img
-rw-r--r-- 1 sdebode sdebode 348 24 Jul 18:55
cluster_mask_zstat4.hdr
-rw-r--r-- 1 sdebode sdebode 524288 24 Jul 18:55
cluster_mask_zstat4.img
-rw-r--r-- 1 sdebode sdebode 1052 24 Jul 18:55
cluster_zstat1.html
-rw-r--r-- 1 sdebode sdebode 204 24 Jul 18:55
cluster_zstat1.txt
-rw-r--r-- 1 sdebode sdebode 1052 24 Jul 18:55
cluster_zstat2.html
-rw-r--r-- 1 sdebode sdebode 204 24 Jul 18:55
cluster_zstat2.txt
-rw-r--r-- 1 sdebode sdebode 3456 24 Jul 18:55
cluster_zstat3.html
-rw-r--r-- 1 sdebode sdebode 657 24 Jul 18:55
cluster_zstat3.txt
-rw-r--r-- 1 sdebode sdebode 2310 24 Jul 18:55
cluster_zstat4.html
-rw-r--r-- 1 sdebode sdebode 459 24 Jul 18:55
cluster_zstat4.txt
-rw-r--r-- 1 sdebode sdebode 379 24 Jul 18:48 design.con
-rw-r--r-- 1 sdebode sdebode 11756 24 Jul 18:48 design.fsf
-rw-r--r-- 1 sdebode sdebode 163509 24 Jul 18:48 design.gif
-rw-r--r-- 1 sdebode sdebode 3719 24 Jul 18:48 design.mat
-rw-r--r-- 1 sdebode sdebode 629961 24 Jul 18:48 design.ppm
-rw-r--r-- 1 sdebode sdebode 1146 24 Jul 18:48 design.trg
-rw-r--r-- 1 sdebode sdebode 128254 24 Jul 18:48 design_cov.gif
-rw-r--r-- 1 sdebode sdebode 571965 24 Jul 18:48 design_cov.ppm
-rw-r--r-- 1 sdebode sdebode 348 24 Jul 18:48 example_func.hdr
-rw-r--r-- 1 sdebode sdebode 262144 24 Jul 18:48 example_func.img
-rw-r--r-- 1 sdebode sdebode 348 24 Jul 18:51
filtered_func_data.hdr
-rw-r--r-- 1 sdebode sdebode 11272192 24 Jul 18:51
filtered_func_data.img
-rw-r--r-- 1 sdebode sdebode 119 24 Jul 18:55 lmax_zstat1.txt
-rw-r--r-- 1 sdebode sdebode 119 24 Jul 18:55 lmax_zstat2.txt
-rw-r--r-- 1 sdebode sdebode 714 24 Jul 18:55 lmax_zstat3.txt
-rw-r--r-- 1 sdebode sdebode 415 24 Jul 18:55 lmax_zstat4.txt
-rw-r--r-- 1 sdebode sdebode 348 24 Jul 18:50 mask.hdr
-rw-r--r-- 1 sdebode sdebode 131072 24 Jul 18:50 mask.img
drwxr-xr-x 11 sdebode sdebode 374 24 Jul 18:50 mc
-rw-r--r-- 1 sdebode sdebode 348 24 Jul 18:55
rendered_thresh_zstat1.hdr
-rw-r--r-- 1 sdebode sdebode 524288 24 Jul 18:55
rendered_thresh_zstat1.img
-rw-r--r-- 1 sdebode sdebode 114549 24 Jul 18:55
rendered_thresh_zstat1.png
-rw-r--r-- 1 sdebode sdebode 348 24 Jul 18:55
rendered_thresh_zstat2.hdr
-rw-r--r-- 1 sdebode sdebode 524288 24 Jul 18:55
rendered_thresh_zstat2.img
-rw-r--r-- 1 sdebode sdebode 115044 24 Jul 18:55
rendered_thresh_zstat2.png
-rw-r--r-- 1 sdebode sdebode 348 24 Jul 18:55
rendered_thresh_zstat3.hdr
-rw-r--r-- 1 sdebode sdebode 524288 24 Jul 18:55
rendered_thresh_zstat3.img
-rw-r--r-- 1 sdebode sdebode 118270 24 Jul 18:55
rendered_thresh_zstat3.png
-rw-r--r-- 1 sdebode sdebode 348 24 Jul 18:55
rendered_thresh_zstat4.hdr
-rw-r--r-- 1 sdebode sdebode 524288 24 Jul 18:55
rendered_thresh_zstat4.img
-rw-r--r-- 1 sdebode sdebode 116907 24 Jul 18:55
rendered_thresh_zstat4.png
-rw-r--r-- 1 sdebode sdebode 4476 24 Jul 18:59 report.com
-rw-r--r-- 1 sdebode sdebode 3974 24 Jul 18:58 report.html
-rw-r--r-- 1 sdebode sdebode 6269 24 Jul 18:59 report.log
drwxr-xr-x 68 sdebode sdebode 2312 24 Jul 18:54 stats
-rw-r--r-- 1 sdebode sdebode 348 24 Jul 18:55
thresh_zstat1.hdr
-rw-r--r-- 1 sdebode sdebode 524288 24 Jul 18:55
thresh_zstat1.img
-rw-r--r-- 1 sdebode sdebode 6 24 Jul 18:54
thresh_zstat1.vol
-rw-r--r-- 1 sdebode sdebode 348 24 Jul 18:55
thresh_zstat2.hdr
-rw-r--r-- 1 sdebode sdebode 524288 24 Jul 18:55
thresh_zstat2.img
-rw-r--r-- 1 sdebode sdebode 6 24 Jul 18:54
thresh_zstat2.vol
-rw-r--r-- 1 sdebode sdebode 348 24 Jul 18:55
thresh_zstat3.hdr
-rw-r--r-- 1 sdebode sdebode 524288 24 Jul 18:55
thresh_zstat3.img
-rw-r--r-- 1 sdebode sdebode 6 24 Jul 18:55
thresh_zstat3.vol
-rw-r--r-- 1 sdebode sdebode 348 24 Jul 18:55
thresh_zstat4.hdr
-rw-r--r-- 1 sdebode sdebode 524288 24 Jul 18:55
thresh_zstat4.img
-rw-r--r-- 1 sdebode sdebode 6 24 Jul 18:55
thresh_zstat4.vol
drwxr-xr-x 102 sdebode sdebode 3468 24 Jul 18:58 tsplot
Ver_No_Contrast.feat:
total 35752
-rw-r--r-- 1 sdebode sdebode 348 24 Jul 18:29
cluster_mask_zstat1.hdr
-rw-r--r-- 1 sdebode sdebode 524288 24 Jul 18:29
cluster_mask_zstat1.img
-rw-r--r-- 1 sdebode sdebode 348 24 Jul 18:29
cluster_mask_zstat2.hdr
-rw-r--r-- 1 sdebode sdebode 524288 24 Jul 18:29
cluster_mask_zstat2.img
-rw-r--r-- 1 sdebode sdebode 348 24 Jul 18:29
cluster_mask_zstat3.hdr
-rw-r--r-- 1 sdebode sdebode 524288 24 Jul 18:29
cluster_mask_zstat3.img
-rw-r--r-- 1 sdebode sdebode 1057 24 Jul 18:29
cluster_zstat1.html
-rw-r--r-- 1 sdebode sdebode 210 24 Jul 18:29
cluster_zstat1.txt
-rw-r--r-- 1 sdebode sdebode 1060 24 Jul 18:29
cluster_zstat2.html
-rw-r--r-- 1 sdebode sdebode 212 24 Jul 18:29
cluster_zstat2.txt
-rw-r--r-- 1 sdebode sdebode 1058 24 Jul 18:29
cluster_zstat3.html
-rw-r--r-- 1 sdebode sdebode 212 24 Jul 18:29
cluster_zstat3.txt
-rw-r--r-- 1 sdebode sdebode 296 24 Jul 18:26 design.con
-rw-r--r-- 1 sdebode sdebode 10375 24 Jul 18:26 design.fsf
-rw-r--r-- 1 sdebode sdebode 144887 24 Jul 18:26 design.gif
-rw-r--r-- 1 sdebode sdebode 3719 24 Jul 18:26 design.mat
-rw-r--r-- 1 sdebode sdebode 558159 24 Jul 18:26 design.ppm
-rw-r--r-- 1 sdebode sdebode 1146 24 Jul 18:26 design.trg
-rw-r--r-- 1 sdebode sdebode 128254 24 Jul 18:26 design_cov.gif
-rw-r--r-- 1 sdebode sdebode 571965 24 Jul 18:26 design_cov.ppm
-rw-r--r-- 1 sdebode sdebode 348 24 Jul 18:26 example_func.hdr
-rw-r--r-- 1 sdebode sdebode 262144 24 Jul 18:26 example_func.img
-rw-r--r-- 1 sdebode sdebode 348 24 Jul 18:27
filtered_func_data.hdr
-rw-r--r-- 1 sdebode sdebode 11272192 24 Jul 18:27
filtered_func_data.img
-rw-r--r-- 1 sdebode sdebode 118 24 Jul 18:29 lmax_zstat1.txt
-rw-r--r-- 1 sdebode sdebode 119 24 Jul 18:29 lmax_zstat2.txt
-rw-r--r-- 1 sdebode sdebode 117 24 Jul 18:29 lmax_zstat3.txt
-rw-r--r-- 1 sdebode sdebode 348 24 Jul 18:27 mask.hdr
-rw-r--r-- 1 sdebode sdebode 131072 24 Jul 18:27 mask.img
drwxr-xr-x 11 sdebode sdebode 374 24 Jul 18:27 mc
-rw-r--r-- 1 sdebode sdebode 348 24 Jul 18:29
rendered_thresh_zstat1.hdr
-rw-r--r-- 1 sdebode sdebode 524288 24 Jul 18:29
rendered_thresh_zstat1.img
-rw-r--r-- 1 sdebode sdebode 122537 24 Jul 18:29
rendered_thresh_zstat1.png
-rw-r--r-- 1 sdebode sdebode 348 24 Jul 18:29
rendered_thresh_zstat2.hdr
-rw-r--r-- 1 sdebode sdebode 524288 24 Jul 18:29
rendered_thresh_zstat2.img
-rw-r--r-- 1 sdebode sdebode 122464 24 Jul 18:29
rendered_thresh_zstat2.png
-rw-r--r-- 1 sdebode sdebode 348 24 Jul 18:29
rendered_thresh_zstat3.hdr
-rw-r--r-- 1 sdebode sdebode 524288 24 Jul 18:29
rendered_thresh_zstat3.img
-rw-r--r-- 1 sdebode sdebode 122217 24 Jul 18:29
rendered_thresh_zstat3.png
-rw-r--r-- 1 sdebode sdebode 3706 24 Jul 18:30 report.com
-rw-r--r-- 1 sdebode sdebode 3722 24 Jul 18:30 report.html
-rw-r--r-- 1 sdebode sdebode 5429 24 Jul 18:30 report.log
drwxr-xr-x 58 sdebode sdebode 1972 24 Jul 18:28 stats
-rw-r--r-- 1 sdebode sdebode 348 24 Jul 18:29 thresh_zstat1.hdr
-rw-r--r-- 1 sdebode sdebode 524288 24 Jul 18:29 thresh_zstat1.img
-rw-r--r-- 1 sdebode sdebode 6 24 Jul 18:28 thresh_zstat1.vol
-rw-r--r-- 1 sdebode sdebode 348 24 Jul 18:29 thresh_zstat2.hdr
-rw-r--r-- 1 sdebode sdebode 524288 24 Jul 18:29 thresh_zstat2.img
-rw-r--r-- 1 sdebode sdebode 6 24 Jul 18:28 thresh_zstat2.vol
-rw-r--r-- 1 sdebode sdebode 348 24 Jul 18:29 thresh_zstat3.hdr
-rw-r--r-- 1 sdebode sdebode 524288 24 Jul 18:29 thresh_zstat3.img
-rw-r--r-- 1 sdebode sdebode 6 24 Jul 18:29 thresh_zstat3.vol
drwxr-xr-x 77 sdebode sdebode 2618 24 Jul 18:30 tsplot
Ver_melodic.ica:
total 53392
-rw-r--r-- 1 sdebode sdebode 368 24 Jul 18:41 PPCA
-rw-r--r-- 1 sdebode sdebode 463 24 Jul 18:41
eigenvalues_adjusted
-rw-r--r-- 1 sdebode sdebode 440 24 Jul 18:41
eigenvalues_percent
-rw-r--r-- 1 sdebode sdebode 348 24 Jul 18:40 example_func.hdr
-rw-r--r-- 1 sdebode sdebode 262144 24 Jul 18:40 example_func.img
-rw-r--r-- 1 sdebode sdebode 348 24 Jul 18:41
filtered_func_data.hdr
-rw-r--r-- 1 sdebode sdebode 11272192 24 Jul 18:41
filtered_func_data.img
-rw-r--r-- 1 sdebode sdebode 348 24 Jul 18:41 mask.hdr
-rw-r--r-- 1 sdebode sdebode 524288 24 Jul 18:41 mask.img
-rw-r--r-- 1 sdebode sdebode 7336 24 Jul 19:13 melodic.log
-rw-r--r-- 1 sdebode sdebode 6013 24 Jul 19:13 melodic_FTmix
-rw-r--r-- 1 sdebode sdebode 348 24 Jul 19:13 melodic_IC.hdr
-rw-r--r-- 1 sdebode sdebode 15204352 24 Jul 19:13 melodic_IC.img
-rw-r--r-- 1 sdebode sdebode 13558 24 Jul 19:13 melodic_mix
drwxr-xr-x 323 sdebode sdebode 10982 24 Jul 19:13 report
-rw-r--r-- 1 sdebode sdebode 7322 24 Jul 19:13 report.log
-rw-r--r-- 1 sdebode sdebode 40 24 Jul 18:41 smoothest
On Aug 9, 2005, at 12:24 PM, Christian Beckmann wrote:
> Stella,
>
> well, is there a file denoise in the directory? Can you send me the
> output of
>
> ls -l *
>
> wc denoise.ica/melodic_mix
>
> and
>
> avwsize denoise
>
> thanks
> Christian
>
>
> On 9 Aug 2005, at 17:08, Stella de Bode wrote:
>
>> Hello
>> i tried to use denoise after running Melodic and got this error
>> message
>>
>>
>> <denoise_FSL command line.tiff>
>> Thank you!
>> stella
>
> --
> Christian F. Beckmann
> Oxford University Centre for Functional
> Magnetic Resonance Imaging of the Brain,
> John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
> Email: [log in to unmask] - http://www.fmrib.ox.ac.uk/~beckmann/
> Phone: +44(0)1865 222782 Fax: +44(0)1865 222717
|