Hi all,
I've discovered something odd (yes, another thing) --
I'm running on RedHat8.
I have run a higher level analysis using myDesign.fsf in two ways. When I load it through the feat
gui and run it, it runs in full. When I run the same file from the command line as
% feat myDesign.fsf
it does not run in full, but stops at "Starting higher-level stats..."
I have looked at the log files, and they differ. The one run from the command line ends like this:
___________
...
/home/softwares/fsl/bin/avwmaths_16SI masksum -thr 9 -uthr 9 -bin -mul maskunique
maskunique
/home/softwares/fsl/bin/overlay 0 0 ../bg_image -a maskunique 0.9 10 maskunique_overlay
/home/softwares/fsl/bin/slicer maskunique_overlay -S 2 750 maskunique_overlay.png
/bin/cp /home/softwares/fsl/etc/luts/ramp.gif .ramp.gif
/home/softwares/fsl/bin/avwmaths mask -Tmin mask
Starting higher-level stats...
___________
whereas the one run from the gui does a bunch more with avwmaths on the cope images.
What's going on? I'd really prefer to script this whole thing.
Best,
Robin
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