I forgot to mention that the Analysis tutorial is now included in the
release documentation. The data for the tutorial is available by separate
download. (It's around 64 Mb.)
And a list of the main Analysis changes (at least those we could remember)
since the previous release:
Fixed bug when printing windows (to PostScript or PDF) which
meant contours were often coming out in wrong location and with wrong
aspect ratio. Also added some code which means that strip plot
windows will print out correctly in PostScript now (not in PDF
because of clipping, which is still to be implemented). Also PDF
now does black and white (as opposed to colour) output. (But
possibly still some problems with PDF in landscape mode.)
Can now make intra-molecule disulphide links when you make a
ResidueInfoPopup now displays a 3D picture of the residue
(with idealised coordinates), as does EditSmallMoleculePopup.
The Assignment panel has an extra option to restrict resonance
possibilities to those which are in repeated residues or spin
systems, e.g. useful when assigning HSQCs.
Bizarre system-specified colors for popups have been defaulted
Merge resonances is fixed (shifts were not merged previously).
The help buttons now have documentation.
Copy peak lists now much quicker and just clones the list.
Atom browser assignment status is now much more robust.
HB*, etc., will only be assigned if stereospecific options are
Deleting a color deletes similarly named color scheme.
Fixed the DNA/RNA three letter codes for odd phosphorylation
When you make a distance constraint list it does not automatically
display the constraints any more since this might take a long time.
Viewing of tables of constraints is much much (an order of magnitude)
When editing entries in a table the focus does not disappear when
the cursor leaves that field (although the cursor must remain on the
Unaliasing a peak now checks to see if the new position is inside
the current spectrum bounds and if not the user may extend the bounds
of the spectrum.
Bugs in setting the sequence of chain fragments (in molecular
systems) are fixed.
Reference chemical shift distributions now have reversed ppm axis.
Deleting a window axis does not delete entire window now.
When generating distance constraints the user is warned of any
peaks which do not have an intensity.
Importing and matching structures to existing chains works better.
Graphical windows now have a help button (in top right corner).