hi christian
that does the trick -thanks!
jane
In message <[log in to unmask]> FSL - FMRIB's
Software Library <[log in to unmask]> writes:
> Hi Jane
>
> yes, you can use 'overlay' and 'slicer' to create images. If you
> already have the rendered_thresh_zstat files, just use slicer, e.g. to
> get a png file of all axial slices, run
>
> slicer filename -A 800 test.png
>
> this will create a png 800 pixels wide and adjust the heights
> accordingly.
> Alternatively, you can use -x,-y or -z options to create sagottal,
> coronal or axial slices (call 'slicer' without any options to see the
> usage)
>
> If you need to create colour overlays, use the 'overlay', e.g. to place
> a zstat file on to a structural, first register both into the same
> space and then use
>
> overlay 0 0 structural -a zstatfilename 3 8 out
>
> This will render zstatfilename on to structural, where the min Z value
> of 3 is red and everything above 8 is yellow
> It also might help to read through some report.com files from FEAT runs
> - the correct syntax is in ther
>
> good luck
> christian
>
>
>
>
> On 17 Mar 2004, at 16:10, Jane Aspell wrote:
>
> > Hi
> >
> > Just a quick question - fslview doesn't seem to have a facility for
> > printing
> > and because of the way i've done my analysis (i don't use higher level
> > feat)
> > there are no .png files created so is there any way i can print an
> > image of
> > the highres brain showing activations that i can see in fslview?
> >
> > thanks a lot
> >
> > Jane Aspell
> >
> --
> Christian F. Beckmann
> Oxford University Centre for Functional
> Magnetic Resonance Imaging of the Brain,
> John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
> Email: [log in to unmask] - http://www.fmrib.ox.ac.uk/~beckmann/
> Phone: +44(0)1865 222782 Fax: +44(0)1865 222717
>
--
Dr Jane Aspell
Department of Experimental Psychology, University of Oxford,
South Parks Road, Oxford, OX1 3UD
tel: +44 (0)1865-281606
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