Hi. As it stands this script probably won't work because of the spurious
"/" on line 2.
WRT the bet command - the -c values should be in mm not voxels - is it
possible that this is the problem? If this is already in mm then could you
try running with the command "bet_32R" instead of bet.
Cheers.
On Thu, 26 Feb 2004, Himachandra Chebrolu wrote:
> Hi Tim,
> I'ce pasted the command line below.I think it's not
> clear so I'ce included a text filw where I pasted the
> command in one single line.
> Thanks,
> Hima.
> #!/bin/csh
> /
> /usr/local/fsl/bin/bet
> /u/home/mristu/chebrolu/data/firstscans/P17837/d17837_mod
> /u/home/mristu/chebrolu/data/firstscans/P17837/d17837brain88145100
> -c 88 145 100
> --- Tim Behrens <[log in to unmask]> wrote:
> > Hi Hima -
> >
> > this looks right.
> > Can you copy and paste the actual command that
> > didn't work into an email
> > please?
> >
> > Thanks
> >
> > Tim
> >
> >
> > On Thu, 26 Feb 2004, Himachandra Chebrolu wrote:
> >
> > > Hello Tim,
> > > This is the format I've been using
> > >
> > > bet <input path> <output Path> -c 90 145 100
> > >
> > > It worked when I used the default parameters,
> > >
> > > bet <input path> <output Path> -f 0.5 -g 0
> > >
> > > Thanks,
> > > Hima.
> > >
> > > --- Tim Behrens <[log in to unmask]> wrote:
> > > > Hiya -
> > > > what was the command line you actually ran?
> > > >
> > > > Thanks
> > > > Tim
> > > >
> > > > On Wed, 25 Feb 2004, Himachandra Chebrolu wrote:
> > > >
> > > > > Hi All,
> > > > > I'm trying to run the BET specifying the
> > center of
> > > > the
> > > > > brain.During my previous session it worked
> > > > fine,but
> > > > > today I don't understand,it runs but does'nt
> > give
> > > > any
> > > > > output file.I tried it with the default
> > parameters
> > > > and
> > > > > it worked fine.It is giving the output.Has
> > anyone
> > > > > encontered a similar problem?
> > > > > Thanks,
> > > > > -Hima.
> > > > >
> > > > > __________________________________
> > > > > Do you Yahoo!?
> > > > > Yahoo! Mail SpamGuard - Read only the mail you
> > > > want.
> > > > > http://antispam.yahoo.com/tools
> > > > >
> > > >
> > > > --
> > > >
> > >
> >
> -------------------------------------------------------------------------------
> > > > Tim Behrens
> > > > Centre for Functional MRI of the Brain
> > > > The John Radcliffe Hospital
> > > > Headley Way Oxford OX3 9DU
> > > > Oxford University
> > > > Work 01865 222782
> > > > Mobile 07980 884537
> > > >
> > >
> >
> -------------------------------------------------------------------------------
> > >
> > >
> > > =====
> > > Himachandra Chebrolu
> > > University Of Kentucky
> > > Lexington,KY-40506
> > >
> > > __________________________________
> > > Do you Yahoo!?
> > > Get better spam protection with Yahoo! Mail.
> > > http://antispam.yahoo.com/tools
> > >
> >
> > --
> >
> -------------------------------------------------------------------------------
> > Tim Behrens
> > Centre for Functional MRI of the Brain
> > The John Radcliffe Hospital
> > Headley Way Oxford OX3 9DU
> > Oxford University
> > Work 01865 222782
> > Mobile 07980 884537
> >
> -------------------------------------------------------------------------------
>
>
> =====
> Himachandra Chebrolu
> University Of Kentucky
> Lexington,KY-40506
>
> __________________________________
> Do you Yahoo!?
> Get better spam protection with Yahoo! Mail.
> http://antispam.yahoo.com/tools
--
-------------------------------------------------------------------------------
Tim Behrens
Centre for Functional MRI of the Brain
The John Radcliffe Hospital
Headley Way Oxford OX3 9DU
Oxford University
Work 01865 222782
Mobile 07980 884537
-------------------------------------------------------------------------------
|