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Subject:

Re: Registration woes

From:

"Fornito, Alexander" <[log in to unmask]>

Reply-To:

FSL - FMRIB's Software Library <[log in to unmask]>

Date:

Fri, 29 Oct 2004 10:44:00 +1000

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (1 lines)

No, unfortunately. 

Thanks for your help!!!



	-----Original Message----- 

	From: Mark Jenkinson [mailto:[log in to unmask]] 

	Sent: Fri 10/29/2004 7:44 AM 

	To: [log in to unmask] 

	Cc: 

	Subject: Re: [FSL] Registration woes

	

	



	Alex,

	

	There are some minor tweaks to the cost function weighting

	that I'm trying on your data but it might be difficult to

	do very well without fieldmap data.  Do you, by any chance,

	have a fieldmap acquired in this session?  The frontal areas

	of the brain are quite stretched, I'm afraid, so I think that

	is why the registration is not doing well in general.  With

	a fieldmap I would be able to correct for this stretching.

	

	I will continue to do what I can, but let me know if you

	have a fieldmap.

	

	        Mark

	

	

	

	On 27 Oct 2004, at 02:56, Fornito, Alexander wrote:

	

	> Hi Mark,

	> Just wandering if you've had a chance to look at the images, and

	> whether

	> you had any comments?

	> Thanks,

	> Alex

	>

	> -----Original Message-----

	> From: Mark Jenkinson [mailto:[log in to unmask]]

	> Sent: Monday, October 18, 2004 4:53 PM

	> To: [log in to unmask]

	> Subject: Re: [FSL] Registration woes

	>

	> Alex,

	>

	> We will look at these this time but please

	> DO NOT send large attachments to the list.

	> If you absolutely cannot use ftp or the web then send

	> large files to us directly, rather than copying them

	> to the hundreds of people on the list.

	>

	>         Mark

	>

	>

	> On 18 Oct 2004, at 06:45, Fornito, Alexander wrote:

	>

	>> Hi Mark,

	>> We don't have a web page or ftp running at the moment, but I've

	>> attached

	>> the initial highres (wholehead epi), highres (that subject's axial T1)

	>> and the weight I created to downweight the signal loss as a compressed

	>> tar file (< 1M). Hope this is ok.

	>> Appreciate all your help!

	>> Alex

	>>

	>> -----Original Message-----

	>> From: Mark Jenkinson [mailto:[log in to unmask]]

	>> Sent: Friday, October 15, 2004 3:28 PM

	>> To: [log in to unmask]

	>> Subject: Re: [FSL] Registration woes

	>>

	>> Hi Alex,

	>>

	>> OK, sounds like you have done the sensible things.

	>> Could you put your images and weighting volumes somewhere

	>> for us to download (web page or ftp)?

	>> We'll take a look at them at this end and see if there

	>> is anything that can be done.

	>>

	>> All the best,

	>>         Mark

	



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