I'm new to fsl, and need a little help with a data-viewing inconsistency.
I ran an analysis, and by looking at the FEAT report, could see that activations in my contrasts did
not survive the clustered threshold analysis. When I view the data in AFNI, and threshold the
image at 1.522, there are some nice (small) clusters of activation that I would like to use for an
Here's the problem: when I load the same .hdr file (it's a tstat image) into fsl view and try to
threshold the image, there are enormous blobs of activation everywhere - the whole brain is
almost red (even with ridiculously high thresholds).
I'm wondering if anyone has encountered this problem before and could give me a little advice on
getting the fslview images to more closely resemble the AFNI ones...