JiscMail Logo
Email discussion lists for the UK Education and Research communities

Help for FSL Archives


FSL Archives

FSL Archives


FSL@JISCMAIL.AC.UK


View:

Message:

[

First

|

Previous

|

Next

|

Last

]

By Topic:

[

First

|

Previous

|

Next

|

Last

]

By Author:

[

First

|

Previous

|

Next

|

Last

]

Font:

Proportional Font

LISTSERV Archives

LISTSERV Archives

FSL Home

FSL Home

FSL  2004

FSL 2004

Options

Subscribe or Unsubscribe

Subscribe or Unsubscribe

Log In

Log In

Get Password

Get Password

Subject:

Re: featquery seems to prefer Linux

From:

Anda van Stegeren <[log in to unmask]>

Reply-To:

FSL - FMRIB's Software Library <[log in to unmask]>

Date:

Tue, 10 Aug 2004 11:40:23 +0200

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (68 lines)

Dear Leonardo Bonilha,
Thanks for sharing your experience with us. 

It fits very well to my experience: i could run the same Featquery_analysis with a Mask made on a LINUX machine without any complication. Now I had to switch to working on a WINDOWS XP/Cygwin environment and Featquery with that same mask creates the now known error message.

Even when I tried to create new masks on the XP/Cygwin machine, (anatomically based with MRICRO, and functionally based with FSL_View) no masks in Featquery lead to a 'normal' run.

So..... 

Steven< if you still want to login and see what happens, it will be difficult in this University environment, for understandable reasons of safety.
I am willing to let you enter onto my home PC where I installed FSL under XP/Cygwin as well with the same problem. If needed: please let me know what you want me to do..

thanks
Anda

Drs. Anda van Stegeren, 
University of Amsterdam 
Department of Clinical Psychology 
Roetersstraat 15 
1018 WB Amsterdam 
The Netherlands 
tel. ++ 31 20 525 6799 
fax. ++31 20 639 1369 
E-mail: [log in to unmask]



-----Original Message-----
From: FSL - FMRIB's Software Library [mailto:[log in to unmask]]On
Behalf Of Leonardo Bonilha
Sent: maandag 9 augustus 2004 20:00
To: [log in to unmask]
Subject: [FSL] featquery seems to prefer Linux


Dear Stephen M. Smith and colleagues,

I recently confronted myself with the same problem that motivated Anda van
Stegeren and Kerstin Preuschoff to write to the list earlier this year: I
was not able to make featquery (working under Windows XP/Cygwin) to run
properly either using a mask or by trying to define standard space
coordinates.

Shortly, what I did was to create a mask with MRIcro using the
example_func.img, or alternatively a high resolution image in standard
space. Within both cases, I received a message stating that the mask size
did not match any of the images in the FEAT directory. Just to ensure that
I was wasn't using different dimension-sized images, I then used avwhd and
fine tuned the images (the mask and its matching image) to be exactly the
same. Yet, the same error remained.

Suspecting that this could be due to a Windows/Cygwin version bug, I then
tried to run the same analysis, i.e., to use exactly the same masks, this
time using Linux (Suse9.1). And it worked uneventfully.

Therefore it seems that this problem with featquery appears to be
restricted to the Windows version of FSL.

Best wishes

Leonardo Bonilha

Div of Psychiatry and
School of Psychology
University of Nottingham, NG7 2RD
Tel: +44 (0) 115 - 95 -15308
http://www.psychology.nottingham.ac.uk/staff/lxb/

Top of Message | Previous Page | Permalink

JiscMail Tools


RSS Feeds and Sharing


Advanced Options


Archives

November 2019
October 2019
September 2019
August 2019
July 2019
June 2019
May 2019
April 2019
March 2019
February 2019
January 2019
December 2018
November 2018
October 2018
September 2018
August 2018
July 2018
June 2018
May 2018
April 2018
March 2018
February 2018
January 2018
December 2017
November 2017
October 2017
September 2017
August 2017
July 2017
June 2017
May 2017
April 2017
March 2017
February 2017
January 2017
December 2016
November 2016
October 2016
September 2016
August 2016
July 2016
June 2016
May 2016
April 2016
March 2016
February 2016
January 2016
December 2015
November 2015
October 2015
September 2015
August 2015
July 2015
June 2015
May 2015
April 2015
March 2015
February 2015
January 2015
December 2014
November 2014
October 2014
September 2014
August 2014
July 2014
June 2014
May 2014
April 2014
March 2014
February 2014
January 2014
December 2013
November 2013
October 2013
September 2013
August 2013
July 2013
June 2013
May 2013
April 2013
March 2013
February 2013
January 2013
December 2012
November 2012
October 2012
September 2012
August 2012
July 2012
June 2012
May 2012
April 2012
March 2012
February 2012
January 2012
December 2011
November 2011
October 2011
September 2011
August 2011
July 2011
June 2011
May 2011
April 2011
March 2011
February 2011
January 2011
December 2010
November 2010
October 2010
September 2010
August 2010
July 2010
June 2010
May 2010
April 2010
March 2010
February 2010
January 2010
December 2009
November 2009
October 2009
September 2009
August 2009
July 2009
June 2009
May 2009
April 2009
March 2009
February 2009
January 2009
December 2008
November 2008
October 2008
September 2008
August 2008
July 2008
June 2008
May 2008
April 2008
March 2008
February 2008
January 2008
December 2007
November 2007
October 2007
September 2007
August 2007
July 2007
June 2007
May 2007
April 2007
March 2007
February 2007
January 2007
2006
2005
2004
2003
2002
2001


JiscMail is a Jisc service.

View our service policies at https://www.jiscmail.ac.uk/policyandsecurity/ and Jisc's privacy policy at https://www.jisc.ac.uk/website/privacy-notice

Secured by F-Secure Anti-Virus CataList Email List Search Powered by the LISTSERV Email List Manager