I tried converting the files back to AFNi through the global desktop but it
doesn't recognize that they've been talairached. Sigh. We're trying your
suggestion now and hope for success.
on 4/7/04 10:12 AM, Jennifer Bramen at [log in to unmask] wrote:
> Hi Katherine,
> Have you used to3d to convert the files into AFNI .HEAD & .BRIK files?
> Here is the command I use:
> to3d -prefix func -time:zt <number slices> <number measurements> <TR>
> zero filtered_func_data.hdr
> # beware: this assumes ANALYZE images are LPI, which is wrong for fsl
> I hope this helps.
> On Apr 7, 2004, at 9:33 AM, Katherine Turner wrote:
>> Hi Folks,
>> We have used FSL for the preprocessing of block design data (BET,
>> FLIRT and MCFLIRT). We now want to take the FEAT output and do
>> in AFNI. We can view the files in AFNI but we are unable to get the
>> to concatenate. We get error messages indicating that the file cannot
>> read. Has anyone else experienced this problem? Is there a simple
>> way to
>> concatenate in FSL and then move the files to AFNI to do 3ddeconvolve?
>> Thanks,ANY help you can give will be greatly appreciated.