Hi Jane
yes, you can use 'overlay' and 'slicer' to create images. If you
already have the rendered_thresh_zstat files, just use slicer, e.g. to
get a png file of all axial slices, run
slicer filename -A 800 test.png
this will create a png 800 pixels wide and adjust the heights
accordingly.
Alternatively, you can use -x,-y or -z options to create sagottal,
coronal or axial slices (call 'slicer' without any options to see the
usage)
If you need to create colour overlays, use the 'overlay', e.g. to place
a zstat file on to a structural, first register both into the same
space and then use
overlay 0 0 structural -a zstatfilename 3 8 out
This will render zstatfilename on to structural, where the min Z value
of 3 is red and everything above 8 is yellow
It also might help to read through some report.com files from FEAT runs
- the correct syntax is in ther
good luck
christian
On 17 Mar 2004, at 16:10, Jane Aspell wrote:
> Hi
>
> Just a quick question - fslview doesn't seem to have a facility for
> printing
> and because of the way i've done my analysis (i don't use higher level
> feat)
> there are no .png files created so is there any way i can print an
> image of
> the highres brain showing activations that i can see in fslview?
>
> thanks a lot
>
> Jane Aspell
>
--
Christian F. Beckmann
Oxford University Centre for Functional
Magnetic Resonance Imaging of the Brain,
John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
Email: [log in to unmask] - http://www.fmrib.ox.ac.uk/~beckmann/
Phone: +44(0)1865 222782 Fax: +44(0)1865 222717
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