Hi,
At the moment there isn't a print output from FSLView,
but you can do screen grabs to get an image of the whole
window and crop it appropriately. Alternatively, you
can use slicer to create output images - and running
things from the command line isn't that hard. For example,
to get an axial image (in the z plane) of a slice with
z-coordinate of 12 (as you can see reported in FSLView)
then you just do the command:
slicer imagename -z -12 slice12.png
This will take the 3D image in the file called imagename and
output a 2D picture called slice12.png
You could convert this to a jpg image if you prefer by running
convert slice12.png slice12.jpg
Note that the .hdr files are part of the ANALYZE format files
that the actual 3D images are stored in.
Hope this helps.
All the best,
Mark
On 18 Nov 2004, at 19:32, No Name wrote:
> Hello:
>
> I am new to fSL. I have finally managed to conduct a higher level
> group analysis. Now, how do I create an output image suitable for
> printing? My preference is to have the activation blobs on top of a
> nice high res. image. I noticed that an earlier post said something
> about slicer. However, I am unfamiliar with running any commands. Is
> there a way to do it with gui? I noticed that FSL VIEW only allows
> ouput in header format. However, I don't know of any power point or
> other programs that read header files. So, output to JPEG or
> something else is preferred.
>
> Thanks
>
> Monique Cherrier
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