Hi,
I was hoping for the ls -l of the mc directory, but if you say they look
fine
then I'm not sure what it might be.
Can you please let us know:
# What platform are you running FSL on (CPU type, OS type & version, how
much RAM, Swap space etc. is available on your system)?
# How did you install FSL (from binaries or compiled from source)?
# Does the software run on the FEEDS example data?
Also, if you tar up the feat directory and put it on a website (or ftp)
we can
download it and have a look at it.
All the best,
Mark
Johannes Klein wrote:
>Hi Mark,
>thanks for your answer!
>I've had a look at the data, and the mcflirt output exists and looks fine
>upon inspection with fslview. The ls -l output is attached. There are no SPM
>files around, I've created new directories for the data. Any suggestions
>what I might do to shed some light onto this would be highly appreciated ...
>It was all so much easier in Würzburg ;)
>Thanks
>Johannes
>
>
>
>>-----Ursprüngliche Nachricht-----
>>Von: FSL - FMRIB's Software Library
>>[mailto:[log in to unmask]] Im Auftrag von Mark Jenkinson
>>Gesendet: Montag, 19. Juli 2004 17:10
>>An: [log in to unmask]
>>Betreff: Re: [FSL] Feat trouble
>>
>>
>>Hi,
>>
>>The report.log has some very strange entries in it after the commands:
>>
>>/bin/mkdir mc ; /bin/mv -f prefiltered_func_data_mcf.par
>>prefiltered_func_data_mcf_abs.rms
>>prefiltered_func_data_mcf_abs_mean.rms
>>prefiltered_func_data_mcf_rel.rms
>>prefiltered_func_data_mcf_rel_mean.rms mc
>>
>>This probably means that something has gone wrong in the
>>mcflirt run which shows up when the motion plots are being
>>generated. One possibility is that mcflirt couldn't write to
>>the right place so that some output was not generated or that
>>there were existing files that were not overwritten (any SPM
>>*.mat files that were in the wrong place could cause a
>>problem like this I guess). However, it could be something
>>unrelated to this as well.
>>
>>Could you check to see if the contents of your mc directory
>>are sensible and like other feat folders? If you are not
>>sure then send us a long listing (ls -l) of this subdirectory.
>>
>>All the best,
>> Mark
>>
>>
>>
>>Johannes Klein wrote:
>>
>>
>>
>>>Hi everyone,
>>>I'm trying to re-evaluate some old data with Feat for
>>>
>>>
>>comparison with
>>
>>
>>>the old SPM results, which is a simple ABAB style block
>>>
>>>
>>design. When I
>>
>>
>>>start the analysis, it runs for awhile and then the console
>>>
>>>
>>says: error
>>
>>
>>>reading "file4": I/O error
>>> while executing
>>>"gets $mcchannel line"
>>> (procedure "feat5:proc" line 598)
>>> invoked from within
>>>"feat5:proc [ file rootname [ lindex $argv 0 ] ]"
>>> (file "/usr/local/fsl/bin/feat" line 17)
>>>Processing stops. I've attached the report.log.
>>>I'm a bit lost here. Can anyone give me a hint what's wrong?
>>>
>>>
>>Thanks for
>>
>>
>>>your time Johannes
>>>
>>>
>>>
>>>
>
>
>
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