Also - note that the output name should be different from the input!
Steve.
On Fri, 26 Mar 2004, Christian F. Beckmann wrote:
> Hi,
>
> please run 'avwhd ../../mriImages/test1' first and check the datatype.
> FSL does support the datatypes listed at
> 'http://www.fmrib.ox.ac.uk/fslfaq/#avwutils_datatype'.
>
> Do any nof the other FSL programs work on your Analyze files, i.e. do
> you actually get anything from running
> 'slices ../../mriImages/test1' ?
>
> cheers
> christian
>
>
>
> On 26 Mar 2004, at 04:57, Surekha wrote:
>
> > Hi,
> >
> > I am having problems using the BET tool. I was hoping to get some help.
> >
> > I have an MRI image file that is in Analyze format. I know it is in
> > Analyze format since
> > I have been able to read it into Matlab using code that reads Analyze
> > files. The file
> > pair has an .img and a .hdr.
> >
> > But when I try to run bet using the files I get the error message
> > "This program has not
> > been compiled for this data type".
> >
> > The command I used was ...
> > ./bet ../../mriImages/test1 ../../mriImages/test1
> > The files that I have are test1.hdr and test2.hdr
> >
> > Please help!
> >
> > I don't understand why I am unable to read these files in. Any
> > suggestions or help is
> > greatly appreciated.
> >
> > Thanks
> >
> > Surekha
> >
> --
> Christian F. Beckmann
> Oxford University Centre for Functional
> Magnetic Resonance Imaging of the Brain,
> John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
> Email: [log in to unmask] - http://www.fmrib.ox.ac.uk/~beckmann/
> Phone: +44(0)1865 222782 Fax: +44(0)1865 222717
>
Stephen M. Smith DPhil
Associate Director, FMRIB and Analysis Research Coordinator
Oxford University Centre for Functional MRI of the Brain
John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
|