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Subject:

AW: [FSL] fsl on cygwin

From:

Andreas Bartsch <[log in to unmask]>

Reply-To:

FSL - FMRIB's Software Library <[log in to unmask]>

Date:

Wed, 4 Aug 2004 22:39:11 +0200

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (1 lines)

Thanks, Clark, that does the trick!

Cheers-

Andreas

 

Dr. A.J. Bartsch

Neuroradiology, BMJU Wuerzburg

www.neuroradiologie.uni-wuerzburg.de 



	-----Urspr√ľngliche Nachricht----- 

	Von: Clark Johnson [mailto:[log in to unmask]] 

	Gesendet: Mi 04.08.2004 18:39 

	An: [log in to unmask] 

	Cc: 

	Betreff: Re: [FSL] fsl on cygwin

	

	



	I've found a work-around for loading an existing design.fsf file.

	

	Navigate to and click on the design file you want to load -- then, while

	still in the "Load FEAT setup" dialog, delete the drive and folder details

	from the "Selection"  text box.  Click on OK.  I've attached a file with

	some screen shots.

	

	In general, it looks like the entire problem with the double path

	specification could be solved is the "Selection" text box was only loaded

	with the selected file and not the entire path to it.

	

	Clark

	

	                          O

	                         o

	                 |||||  o

	                 -   -

	               @(0)-(0)@

	----------oOOO-----U-----OOOo---------------

	 Clark Johnson

	 Research Associate Professor

	 Box 357263

	 Seattle, WA 98195-7263

	 P:(206)685-0818 F:(206)685-9551

	

	

	-----Original Message-----

	From: FSL - FMRIB's Software Library [mailto:[log in to unmask]]On

	Behalf Of Stephen Smith

	Sent: Wednesday, August 04, 2004 1:05 AM

	To: [log in to unmask]

	Subject: Re: [FSL] fsl on cygwin

	

	

	Hi Andreas,

	

	Actually all 3 issues are part of the same thing, which is that FSL for

	windows was configured to work on a simple partition (etc)  setup like you

	get with a simple standard windows installation. There are various strange

	interactions eg between TCL and windows that breaks things like the file

	select pathnames when you have certain differences from what we had when

	we set it up. WRT internet explorer, annoyingly windows has a _different_

	pathname for internet explorer when you have a different language selected

	when you install windows....but FSL help should just call IE.

	

	So - there must be a more robust way of setting all these things - any

	input from Windows gurus would be appreciated, and we'll try to include

	such changes in the new release.

	

	Cheers.

	

	

	On Wed, 4 Aug 2004, Andreas Bartsch wrote:

	

	> Hi,

	> I had to install fsl on cygwin for a collegue. It went quite smoothly,

	feeds is ok. However, maybe others know remedies to:

	> 1) get some sort of internet browser running on cygwin to activate the

	help (I thought about softlinking to windoze default browser but I am not

	sure - can you install mozilla on cywin and substitute the fsl-help default

	webbrowser call to be replaced by mozilla?)

	> 2) the following file select error: when selecting files via the GUI, the

	source-dir is 'doubled' - i.e., if the file x.txt is located under

	E:\cygwin\usr\local and I click in the file selector at it, it will

	eventually show up as

	> E:\cygwin\usr\local\E:\cygwin\usr\local\x.txt

	> and produce an error. Mostly, you can simply remove the front

	'E:\cygwin\usr\local' but it is very annoying and is does not seem to work

	for loading any *.fsf files (i.e., these turned out unloadable via the GUI).

	> 3) having multiple partitions, fsl on cygwin can only access and work on

	files on the partition cygwin was installed on. Is there any way to access

	other partitions?

	> Thanks a lot in advance-

	> Andreas

	>

	

	 Stephen M. Smith  DPhil

	 Associate Director, FMRIB and Analysis Research Coordinator

	

	 Oxford University Centre for Functional MRI of the Brain

	 John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK

	 +44 (0) 1865 222726  (fax 222717)

	

	 [log in to unmask]  http://www.fmrib.ox.ac.uk/~steve

	



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