Hi all,
I went through the login file, It says:
****************************************
vwOpen: Error while opening header!: No such file or directory
Rendering using zmin=2.3 zmax=8
***************************************
Is any people can tell me which headfile it could be?
Thanks!
wei
Started FEAT at Tue Jan 20 12:35:00 EST 2004 on kids
/bin/cp /tmp/feat_WITwRM.fsf design.fsf
/autofs/space/lyon_006/pubsw/Linux2/packages/fsl/3.1/bin/feat_model design
Total original volumes = 1478
Deleting 2 volume(s) - BE WARNED for future analysis!
/autofs/space/lyon_006/pubsw/Linux2/packages/fsl/3.1/bin/avwroi
/space/kids/11/users/Kuo_gingiJan162004/bold/023/fmri
prefiltered_func_data 2 1476
/autofs/space/lyon_006/pubsw/Linux2/packages/fsl/3.1/bin/avwroi
prefiltered_func_data example_func 738 1
/autofs/space/lyon_006/pubsw/Linux2/packages/fsl/3.1/bin/betfunc
prefiltered_func_data prefiltered_func_data_bet
/autofs/space/lyon_006/pubsw/Linux2/packages/fsl/3.1/bin/ip
prefiltered_func_data_bet filtered_func_data 10 -s 4.24628450106 -m mask
-I 10000 -t 10.0 -1 | grep THRESHOLD | awk '{ print }' -
1000.000000
rm -rf prefiltered_func_data*
/autofs/space/lyon_006/pubsw/Linux2/packages/fsl/3.1/bin/film_gls -rn
stats -sa -ms 5 -sp
/autofs/space/lyon_006/pubsw/Linux2/packages/fsl/3.1/bin/susan_smooth
filtered_func_data design.mat 1000.000000
Log directory is: stats
Loading image... Completed
Applying threshold to Series... Completed
Calculating residuals...
Completed
Estimating residual autocorrelation...
Calculating raw AutoCorrs... Completed
mode = 9449.12
sig = 3952
Spatially smoothing auto corr estimates
/autofs/space/lyon_006/pubsw/Linux2/packages/fsl/3.1/bin/susan_smooth
stats/preSmoothVol 1 stats/postSmoothVol 5 3D 0 1 stats/epivolume 1317
stats/usanSize
.....................................
rm -rf stats/postSmoothVol* stats/preSmoothVol* stats/usanSize*
Completed
Tukey M = 38
Tukey estimates... Completed
Completed
Prewhitening and Computing PEs...
Percentage done:
1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,Completed
Saving results...
Unthresholding Series... Completed
Saving image... Completed
Thresholding Series... Completed
Unthresholding Series...
/autofs/space/lyon_006/pubsw/Linux2/packages/fsl/3.1/bin/contrast_mgr
stats design.con
AvwOpen: Error while opening header!: No such file or directory
Rendering using zmin=2.3 zmax=8
/autofs/space/lyon_006/pubsw/Linux2/packages/fsl/3.1/bin/tsplot . -f
filtered_func_data
Cannot open volume ./stats/pe1.hdr for reading!
mkdir tsplot
/bin/mkdir reg
/bin/rm -f example_func.hdr example_func.img
ln -s ../example_func.hdr example_func.hdr
ln -s ../example_func.img example_func.img
/bin/rm -f highres.hdr highres.img
ln -s /space/kids/11/users/Kuo_gingiJan162004/Struc/005/Stru_brain.hdr
highres.hdr
ln -s /space/kids/11/users/Kuo_gingiJan162004/Struc/005/Stru_brain.img
highres.img
/bin/rm -f standard.hdr standard.img
ln -s
/autofs/space/lyon_006/pubsw/Linux2/packages/fsl/3.1/etc/standard/avg152T1_brain.hdr
standard.hdr
ln -s
/autofs/space/lyon_006/pubsw/Linux2/packages/fsl/3.1/etc/standard/avg152T1_brain.img
standard.img
/autofs/space/lyon_006/pubsw/Linux2/packages/fsl/3.1/bin/flirt -ref
highres -in example_func -out example_func2highres -omedx
example_func2highres.xfm -omat example_func2highres.mat -cost corratio
-dof 12 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -interp
trilinear
/autofs/space/lyon_006/pubsw/Linux2/packages/fsl/3.1/bin/convert_xfm
-matonly -inverse -omat highres2example_func.mat example_func2highres.mat
/autofs/space/lyon_006/pubsw/Linux2/packages/fsl/3.1/bin/slicer
example_func2highres highres -s 1 -x 0.35 sla -x 0.45 slb -x 0.55 slc -x
0.65 sld -y 0.35 sle -y 0.45 slf -y 0.55 slg -y 0.65 slh -z 0.35 sli -z
0.45 slj -z 0.55 slk -z 0.65 sll ;
/autofs/space/lyon_006/pubsw/Linux2/packages/fsl/3.1/bin/convert -colors
100 +append sla slb slc sld sle slf slg slh sli slj slk sll
example_func2highres.gif ; /bin/rm -f sla slb slc sld sle slf slg slh sli
slj slk sll
/bin/rm -f example_func2highres.hdr example_func2highres.img
/autofs/space/lyon_006/pubsw/Linux2/packages/fsl/3.1/bin/flirt -ref
standard -in highres -out highres2standard -omedx highres2standard.xfm
-omat highres2standard.mat -cost corratio -dof 12 -searchrx -90 90
-searchry -90 90 -searchrz -90 90 -interp trilinear
/autofs/space/lyon_006/pubsw/Linux2/packages/fsl/3.1/bin/convert_xfm
-matonly -inverse -omat standard2highres.mat highres2standard.mat
/autofs/space/lyon_006/pubsw/Linux2/packages/fsl/3.1/bin/slicer
highres2standard standard -s 1 -x 0.35 sla -x 0.45 slb -x 0.55 slc -x 0.65
sld -y 0.35 sle -y 0.45 slf -y 0.55 slg -y 0.65 slh -z 0.35 sli -z 0.45
slj -z 0.55 slk -z 0.65 sll ;
/autofs/space/lyon_006/pubsw/Linux2/packages/fsl/3.1/bin/convert -colors
100 +append sla slb slc sld sle slf slg slh sli slj slk sll
highres2standard.gif ; /bin/rm -f sla slb slc sld sle slf slg slh sli slj
slk sll
/bin/rm -f highres2standard.hdr highres2standard.img
/autofs/space/lyon_006/pubsw/Linux2/packages/fsl/3.1/bin/convert_xfm -ref
standard -in example_func -omedx example_func2standard.xfm -omat
example_func2standard.mat -concat highres2standard.mat -middlevol highres
example_func2highres.mat
/autofs/space/lyon_006/pubsw/Linux2/packages/fsl/3.1/bin/flirt -ref
standard -in example_func -out example_func2standard -applyxfm -init
example_func2standard.mat -interp trilinear
/autofs/space/lyon_006/pubsw/Linux2/packages/fsl/3.1/bin/convert_xfm
-matonly -inverse -omat standard2example_func.mat
example_func2standard.mat
/autofs/space/lyon_006/pubsw/Linux2/packages/fsl/3.1/bin/slicer
example_func2standard standard -s 1 -x 0.35 sla -x 0.45 slb -x 0.55 slc -x
0.65 sld -y 0.35 sle -y 0.45 slf -y 0.55 slg -y 0.65 slh -z 0.35 sli -z
0.45 slj -z 0.55 slk -z 0.65 sll ;
/autofs/space/lyon_006/pubsw/Linux2/packages/fsl/3.1/bin/convert -colors
100 +append sla slb slc sld sle slf slg slh sli slj slk sll
example_func2standard.gif ; /bin/rm -f sla slb slc sld sle slf slg slh sli
slj slk sll
/bin/rm -f example_func2standard.hdr example_func2standard.img
Finished registration at Wed Jan 21 00:36:18 EST 2004
Finished FEAT at Wed Jan 21 00:36:18 EST 2004
To view the FEAT report point your web browser at
/autofs/space/kids_011/users/Kuo_gingiJan162004/bold/023/no_motion_correction.feat/report.html
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