When I run segmentations using FAST, the output formatting is off.
The partial volume estimates appear before the rest of the output,
immediately following the call line. Am I okay assuming the order
of the output is still CSF, grey, white? Have I done something
wrong that I could fix so that the output is correctly formatted?
Thanks so much for your help,
An example of such output appears below:
Heathers_Stuff/NewFSL/FSL3.1/fsl/bin/fast -t1 -c 3 -od /Network/
343016.6 780151.8 513022.8
FAST - FMRIB's Automated Segmentation Tool Version 3.3
Imagesize : 256 x 256 x 128
Pixelsize : 1 x 1 x 2
Initial K-means segmentation...
8 main iterations ...
Segmentation done successfully!
Calculation time 321 seconds!
Write segmentation image /Network/Servers/CCDXS01/NetUsers/
Class: CSF tissue 1 tissue 2 brain percentage