I found it... but only in some feat directories. I'm not 100% sure, but I think the commands do
not get recorded in report.com if you only do preprocessing. Kinda strange. Anyway, thanks,
>check the report.com file in one of your .feat dirs.
>After having called mcflirt, the plots are generated from the .par file
>with the help of gnuplot, the relevant command in report.com starts
>echo "set term pbm color..."
>On 13 Jan 2004, at 08:03, Jack Grinband wrote:
>> Hi Mark,
>> How are the .ppm files generated (i.e. rot.ppm, trans.ppm & disp.ppm)?
>> I'm running the following command:
>> mcflirt -in myfile -o myfile_mc -cost mutualinfo -refvol 0 -stats
>> -plots -rmsrel -rmsabs
>> but I'm not seeing any .ppm files. The feat report.log doesn't show
>> any other commands that
>> could possibly generate them.
> Christian F. Beckmann
> Oxford University Centre for Functional
> Magnetic Resonance Imaging of the Brain,
> John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
> Email: [log in to unmask] - http://www.fmrib.ox.ac.uk/~beckmann/
> Phone: +44(0)1865 222782 Fax: +44(0)1865 222717