check the report.com file in one of your .feat dirs.
After having called mcflirt, the plots are generated from the .par file
with the help of gnuplot, the relevant command in report.com starts
echo "set term pbm color..."
On 13 Jan 2004, at 08:03, Jack Grinband wrote:
> Hi Mark,
> How are the .ppm files generated (i.e. rot.ppm, trans.ppm & disp.ppm)?
> I'm running the following command:
> mcflirt -in myfile -o myfile_mc -cost mutualinfo -refvol 0 -stats
> -plots -rmsrel -rmsabs
> but I'm not seeing any .ppm files. The feat report.log doesn't show
> any other commands that
> could possibly generate them.
Christian F. Beckmann
Oxford University Centre for Functional
Magnetic Resonance Imaging of the Brain,
John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
Email: [log in to unmask] - http://www.fmrib.ox.ac.uk/~beckmann/
Phone: +44(0)1865 222782 Fax: +44(0)1865 222717