Hi Brian, thanks for sending the images. FLIRT worked fine on what you
sent, just using all the defaults:
flirt -in S057_061303+origbrain -ref localtemplate -o grot
So I'm guessing that you maybe aren't using the latest version, or have
platform problems. Have you tried using the latest redhat7 binaries on
your redhat8 machines, or else recompiling from source?
On Thu, 16 Dec 2004, Brian Gordon wrote:
> We are using flirt on a large number (100+) of T1 weighted images.
> Although BET worked on every image, flirt does not. It seems an almost
> random pattern as to which brains flirt does not work on, and which ones
> it will work on. All the images were gathered on the same scanner with the
> same sequence. Thanks.
> Brian Gordon
> University of Illinois
Stephen M. Smith DPhil
Associate Director, FMRIB and Analysis Research Coordinator
Oxford University Centre for Functional MRI of the Brain
John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve