Hi,
No need to recompile - the file you download is a redhat binary.
All other specs look fine.
Hence all you need to do is:
1 - download the file from the website (as flirt_noopt)
2 - mv $FSLDIR/bin/flirt $FSLDIR/bin/flirtopt
3 - mv flirt_noopt $FSLDIR/bin/flirt
4 - chmod a+x $FSLDIR/bin/flirt
You may need an administrator to do the last 3 steps, depending
on whether you have permission to write to $FSLDIR or not.
All the best,
Mark
JONGCHUL YOUN wrote:
>Hi.
>
>Operating system : Redhat linux 9.0 (English version)
>CPU: Intel Pentium IV 1GHz
>RAM memory : 752MB
>SWAP: 1.5GB
>Hard disk : 35G (Using 28G)
>monitor : syncmaster, Samsung
>VGA card : NVIDIA GeForce 2MX
>
>Many Thanks.
>
>
>
>--- Mark Jenkinson <[log in to unmask]> wrote: > Hi,
>
>
>>Could you please supply some details about the
>>system you are
>>running on. What operating system (include the
>>version number - e.g.
>>redhat 8),
>>what cpu (e.g. Athlon 1800), how much RAM, how much
>>swap space, how
>>much disk space, etc etc.
>>
>> Mark
>>
>>
>>On Thursday, January 8, 2004, at 03:35 am, JONGCHUL
>>YOUN wrote:
>>
>>
>>
>>>Hi Mark.
>>>
>>>Thanks for your comment.
>>>But, I'm not familiar with compiling linux.
>>>I downloaded the file you mentioned. But, I could
>>>
>>>
>>not
>>
>>
>>>handle this.
>>>Could you guide me some detail?
>>>
>>>Many thanks.
>>>
>>>
>>>--- Mark Jenkinson <[log in to unmask]> wrote: >
>>>
>>>
>>Hi,
>>
>>
>>>>Are you running this on a linux machine?
>>>>There appears to be a problem with FLIRT compiled
>>>>
>>>>
>>on
>>
>>
>>>>Redhat 8 and 9. If
>>>>you are getting segmentation faults when running
>>>>flirt, then download
>>>>the non-optimised version from
>>>>www.fmrib.ox.ac.uk/fsldownloads/flirt_noopt
>>>>
>>>>
>>>>
>><http://www.fmrib.ox.ac.uk/fsldownloads/flirt_noopt>
>>
>>
>>>>which, although it
>>>>runs slower, should not crash. In the unlikely
>>>>
>>>>
>>event
>>
>>
>>>>that it still
>>>>crashes, please post the details on the FSL email
>>>>list.
>>>>
>>>>All the best,
>>>> Mark
>>>>
>>>>
>>>>Jong Chul Youn wrote:
>>>>
>>>>
>>>>
>>>>>Hi.
>>>>>
>>>>>I set up FSL and run sienax for my 3D saggital
>>>>>
>>>>>
>>SPGR
>>
>>
>>>>>MRI data.
>>>>>I preprocessed using ANALYZE and input analyze
>>>>>
>>>>>
>>7.5
>>
>>
>>>>>file.
>>>>>Many cases were done smoothly,but some of 3 D
>>>>>
>>>>>
>>data
>>
>>
>>>>>showed error like this;
>>>>>
>>>>>
>>>>>[ocalhosyjc0811@lt ~]$ sienax
>>>>>/home/yjc0811/sampleT1T2/PRD/466/T1/0466 -r
>>>>>Could not open matrix file
>>>>>/home/yjc0811/sampleT1T2/PRD/466/T1/04662tal.mat
>>>>>dc: stack empty
>>>>>dc: stack empty
>>>>>dc: stack empty
>>>>>Could not open matrix file
>>>>>/home/yjc0811/sampleT1T2/PRD/466/T1/04662tal.mat
>>>>>Cannot read input-matrix
>>>>>Could not open matrix file
>>>>>
>>>>>
>>>>
>>>>
>>/home/yjc0811/sampleT1T2/PRD/466/T1/04662tal_inv.mat
>>
>>
>>>>>Could not open matrix file
>>>>>
>>>>>
>>>>
>>>>
>>/home/yjc0811/sampleT1T2/PRD/466/T1/04662tal_inv.mat
>>
>>
>>>>>Could not open matrix file
>>>>>
>>>>>
>>>>
>>>>
>>/home/yjc0811/sampleT1T2/PRD/466/T1/04662tal_inv.mat
>>
>>
>>>>>dc: stack empty
>>>>>dc: stack empty
>>>>>dc: stack empty
>>>>>dc: stack empty
>>>>>988369.375000
>>>>>
>>>>>It might be registration error. But, I can't
>>>>>
>>>>>
>>solve
>>
>>
>>>>>this problem.
>>>>>Could you guide me to solve this problem?
>>>>>
>>>>>=====
>>>>>Jong Chul Youn, M.D
>>>>>Department of Neuropsychiatry
>>>>>Kyunggi provincial Hospital for the Elderly
>>>>>e-mail: [log in to unmask]
>>>>>tel. 82-31-288-0417
>>>>>fax. 82-31-288-0405
>>>>>
>>>>>
>>>>>
>>>>>
>>>=====
>>>Jong Chul Youn, M.D
>>>Department of Neuropsychiatry
>>>Kyunggi provincial Hospital for the Elderly
>>>e-mail: [log in to unmask]
>>>tel. 82-31-288-0417
>>>fax. 82-31-288-0405
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>_____________________________________________________________________
>
>
>>>?9;[ FmAvAv?! 8^@O@; :83;<<?d - >_HD!
>>>
>>>
>>8^@O
>>
>>
>>>http://mail.yahoo.co.kr
>>>=EBw,A_0mBw,Aw0E7! 8E90@L [log in to unmask] -
>>>
>>>
>>>_HD! @Z5?Bw
>>
>>
>>>http://autos.yahoo.co.kr/autos/
>>>
>>>
>>
>>
>>
>
>=====
>Jong Chul Youn, M.D
>Department of Neuropsychiatry
>Kyunggi provincial Hospital for the Elderly
>e-mail: [log in to unmask]
>tel. 82-31-288-0417
>fax. 82-31-288-0405
>
>
>
>
>
>_____________________________________________________________________
>¿¹»Û ÆíÁöÁö¿¡ ¸ÞÀÏÀ» º¸³»¼¼¿ä - ¾ßÈÄ! ¸ÞÀÏ
>http://mail.yahoo.co.kr
>½ÅÂ÷,Áß°íÂ÷,Á÷°Å·¡ ¸Å¹°ÀÌ ÇÑÀÚ¸®¿¡ - ¾ßÈÄ! ÀÚµ¿Â÷
>http://autos.yahoo.co.kr/autos/
>
>
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