I'm having some trouble creating headers. When I run avwcreatehd I get an error:
Multiple image files detected. STOPPED.
I commented out the FSLMULTIFILEQUIT. Now there's no more "STOPPED" error. But I still get the
"multiple files detected" warning.
When I set the filename to "run1", avwcreatehd generates an .img file and a .gz file. No .hdr file is
If I set the filename to "run1.img", then avwcreatehd generates an .img file and a .hdr file
(although the file type of the .hdr is Nifti not Analyze).
In either case, FSLview and slices say that the files are empty.
Am I doing something wrong or is there a problem with avwcreatehd?