hi Jason,
If this is truly just for visualization of the single subject data,
then I don't see why you wouldn't want to register the individual
subjects and their stats to the group space. Do you use afni or any
other data visualization program? If so, a really easy solution to
this problem is to view the thresholded stats and underlying subject
anatomy in standard space using afni. this way, you still run your
analysis in fsl while subjects are in native space, but view images in
an atlas friendly orientation post hoc. Another nice feature of afni
is that you can warp the brain into talaraich space and use an
electronic atlas (the "where am i" feature)
Best
jen
On May 18, 2004, at 6:59 AM, Jason Steffener wrote:
> Hello,
> I want to reorient some images so that they display in their
> subject space in the conventional orientation thereby making it easier
> to
> identify locations from an atlas. So I would like to control this by
> hand.
> thanks,
> Jason.
>
> On Tue, 18 May 2004, Stephen Smith wrote:
>
>> Hi Jason - maybe just use FLIRT to register to the standard space
>> template? Does that give you what you want? Or did you want to control
>> this by hand?
>>
>> Cheers.
>>
>>
>> On Wed, 12 May 2004, Jason Steffener wrote:
>>
>>> Hello.
>>> I have high resolution anatomical images collected in an
>>> ''odd''
>>> orientation. I would like to rotate them relative to the AC-PC plane
>>> and
>>> create new image isn this orientation. Is there any way to determine
>>> how
>>> much to rotate the images and then how to apply the rotations?
>>> thank you,
>>> Jason.
>>>
>>> Jason Steffener
>>> Department of Radiology
>>> New Jersey Medical School
>>> Biomedical Engineering Department
>>> New Jersey Institute of Technology
>>> Newark, NJ USA
>>> (973) 676-1000 x1545
>>> http://web.njit.edu/~jrs3
>>>
>>
>> Stephen M. Smith DPhil
>> Associate Director, FMRIB and Analysis Research Coordinator
>>
>> Oxford University Centre for Functional MRI of the Brain
>> John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
>> +44 (0) 1865 222726 (fax 222717)
>>
>> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
>>
>
> Jason Steffener
> Department of Radiology
> New Jersey Medical School
> Biomedical Engineering Department
> New Jersey Institute of Technology
> Newark, NJ USA
> (973) 676-1000 x1545
> http://web.njit.edu/~jrs3
>
>
Jennifer Bramen
UCLA Brain Mapping Center
660 Charles Young Dr. So
Los Angeles, CA 90095
|