Hi Steve,
I got plenty o' raw (and swap) for this. I have a tarred zipped file
of the info, but it's 77 MB and for some reason we only have an ftp site
that can handle 10MB. Any other way I can get it to you? Do you have a
site I can ftp onto by any chance?
Cheers,
Josh
>-----Original Message-----
>From: Stephen Smith [mailto:[log in to unmask]]
>Sent: Thursday, December 11, 2003 7:32 AM
>To: [log in to unmask]
>Subject: Re: [FSL] command line flame
>
>
>Hi Joshua, do you have enough ram/swap for this? Watch "top"
>as it tries to run. If that's not the problem then feel free
>to make a tarfile of the inputs and design files and stick it
>on a web/ftp site and we'll take a look.
>
>Cheers.
>
>
>On Mon, 8 Dec 2003, Joshua Korn wrote:
>
>> Hi Steve et al,
>> I'm trying to run flame command-line, as I am doing all the
>> registration not through normal channels. I take my
>registered copes
>> and varcopes and do an avwmerge -t on them, and create a mask for
>> them. The design.* I stole from what FEAT output when I
>tried to do it
>> in there, and should be correct (I'm just trying a simple
>group mean).
>> Unfortunately, flame runs for a while and then "aborts" and I'm not
>> sure why. Anyone have a good clue? Thanks,
>> Josh
>>
>> flame --cope=cope4d --varcope=varcope4d --mask=mask --dm=design.mat
>> --cs=design.grp --tc=design.con --ols --nj=10000 --bi=500
>--se=1 --fm
>> --zlt=2 --zut=20 --verbose Log directory is: logdir+
>> Setting up:
>> No f contrasts
>> nevs=1
>> ntpts=8
>> ngs=1
>> nvoxels=1774153
>> Running:
>> nmaskvoxels=86485
>> njumps = 10000
>> burnin = 500
>> sampleevery = 1
>> nsamples = 9500
>>
>> Abort
>> 884.431u 6.271s 14:50.80 99.9% 0+0k 0+0io 1123pf+0w
>>
>
> Stephen M. Smith DPhil
> Associate Director, FMRIB and Analysis Research Coordinator
>
> Oxford University Centre for Functional MRI of the Brain
> John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
> +44 (0) 1865 222726 (fax 222717)
>
> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
>
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