Hi - without more information I'm not sure what to say. One thing to check
- I think you have to be in the data directory when you run siena - ie all
input and output files have to be in the same directory. if it still
doesn't work - email me example data directly (or better still put the
whole input and output directory into a tarfile on a website) and I will
test. We have access to Solaris so I can test on that.
thanks, Steve.
On Thu, 8 Aug 2002, Wymore, Allison (NIMH) wrote:
> Hello,
>
> I'm trying to get the solaris version of siena working. In
> particular, I'm doing single time point volume estimation, so I'm using
> sienax. The program goes through BET, flirt, and fast seemingly without
> errors. However, the It claims to successfully write:
>
> A_talmaskbrain_seg.hdr (where A is input filename root) But then in the next
> step, can't find the file. Even when I run with debug option -d on, the
> file fails to appear in a directory list, even though the log file says the
> file is successfully written. (As well as the PVE files). However, the
> listed values for CSF and brain matter are 0, with brain percentage being
> NaN. Any ideas?
>
>
>
> Please reply directly to me.
>
>
>
> Thanks!
>
>
>
> Allison Wymore, PhD
>
> MRI Physicist
>
> NIH/NIMH/MIB/MADP
>
> (301)451-8863
>
>
>
>
Stephen M. Smith
Head of Image Analysis, FMRIB
Oxford University Centre for Functional MRI of the Brain
John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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