hi - is it possible that there's a space in your filename? the software
may not like that.....also, it might be a case-sensitive thing? Mac is a
bit strange about case...
if you think it's related to this particular image, feel free to email me
the image directly and we'll run it on our mac here.
thanks, Steve.
On Thu, 25 Jul 2002, Zrinka Bilusic wrote:
> I am running fsl on Mac OSX and I have been having some problems with
> bet. I have run many of these in the past couple of days, both command
> line (from a script) and GUI. But today I am constantly getting
> 'couldn't write' error from bet. I have checked the permissions and they
> are fine (and I have more than enough disk space). Also, the input file
> is not corrupted and I actually ran FEAT pre-stats analysis on the same
> file earlier today.It writes part of the file but not the whole file.
> Here is the output:
> -------------
> /usr/local/bin/fsl/bin/bet /Volumes/Obelix/Data/SmokingScan-
> Analysis/hook015-1/hook015-1-Smoking
> /Volumes/Obelix/Data/SmokingScan-Analysis/hook015-1/Smoking_brain -f 0.3
> -g 0
> hist_min=0.000000 thresh2=3.000000 thresh=38.000000 thresh98=348.000000
> hist_max=971.000000
> THRESHOLD 38.000000
> CofG (94.867723,108.124917,32.987782) mm
> RADIUS 67.943655
> MEDIANVAL 235.000000
> self-intersection total = 32.682201 (threshold=4000.000000)
> Couldn't write /Volumes/Obelix/Data/SmokingScan-
> Analysis/hook015-1/Smoking_brain.img
> -------------
>
> any ideas??
>
> THANKS!
>
> zrinka
>
Stephen M. Smith
Head of Image Analysis, FMRIB
Oxford University Centre for Functional MRI of the Brain
John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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