I was having problems using BET (it was drawing the contours much too
small) when I used images that I had converted from Dicom to Analyze format
with ImageJ (using the Analyze Writer plugin from
http://rsb.info.nih.gov/ij/plugins/analyze.html to write out a stack of
T2-wtd anatomical images). When I converted them with MRIcro then BET
worked fine. Anyone had this problem and know how to fix it within ImageJ?
Perhaps ImageJ throws out some header information (such as field of view)
that BET requires?
This is really only an issue for me because I run FSL on a Mac, and MRIcro
is for windows only. If someone knows a reliable way to convert these files
with some other simple to use Mac friendly software that would be great.
Thanks,
John
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