Quoting Stephen Smith <[log in to unmask]>:
Hi all,
Thanks for this method for doing the third-level analysis! Overall it
worked very well, however, there seems to be error in the lists of clusters
that I get back, for all of them have positive values for coordinates. Even
if the display shows activation on both sides of the brain, the coordinates
for all the clusters are all positive. If anyone could help me with this
issue that would be great, thanks!
-Eric
> # do cluster-based thresholding and rendering
> easythresh gp_pe1_Z <some mask you made> 2.3 0.05
> <underlyingrenderimage> gp_pe1_Z
>
> you can get easythresh from
> http://www.fmrib.ox.ac.uk/~steve/ftp/easythresh
> after downloading you need to make it executable by
> chmod a+x easythresh
>
> Stephen M. Smith
> Head of Image Analysis, FMRIB
>
> Oxford University Centre for Functional MRI of the Brain
> John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
> +44 (0) 1865 222726 (fax 222717)
>
> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
>
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