Hello,
I would like to register axial-oblique epi-slices to anatomically
corresponding hires-slices. Stacks have different matrix-sizes and FOV:s.
With 2D-registration with 5dof schedule-file I get very nice registration for
the upper three slices, but lower two get "squeezed" into only most frontal
part of the slice. I believe that it might have something to do with
venticles, which are clearly visible in the lowest two slices.
The registration was so good in the upper slices, that I'm very anxious to
get flirt to succeed also in the lower slices. How could I avoid this
"squeezing"?
With best regards,
Pasi Tuunanen
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