Hi Steve and all in the list,
> email, probably do not want their inbox filled with huge emails. Thus
> indeed please do send the original questions/comments to the FSL list, but
> send data directly to us. sorry!
I truly appologize for sending the data to list rather than to Steve. I
realized that when it was already late. Again, sorry.
I followed your instructions, updated flirt to latest linux binaries and
after that all went fine.
I have still one more question. How perfect registration can I expect?
Idealy, I would like to have exact shape of each gyri in T1-weighted images
as they are in T2-weighted images. My idea is to segment T1 images for GM/WM,
create masks of WM/GM pixels, and use these to segment T2-w images.
PS: Thank you, once again, to Steve for fast help.