Hi - sounds like an unusual problem. I think MEDx will complain if you are
trying to apply the wrong kind of saved "shadow" transform, so I'm not
sure. I suggest that you email me _directly_ all the images involved and
the transform you saved to file (and also ideally the MEDx Folder - don't
forget to turn on "save all images in folder" in the folder properties
first). It should be straightforward to track this down. which version of
MEDx are you using?
thanks :)
Stephen M. Smith
Head of Image Analysis, FMRIB
Oxford University Centre for Functional MRI of the Brain
John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
On Sat, 1 Dec 2001, Hackjin Kim wrote:
> Hi Steve,
>
> Thansk for your quick reply.
>
> I was trying to use FLIRT to register partial volume coronal images to
> whole brain axial images. When I saw the registered partial volume, the
> fit was good, so I saved the transform using shadow transform option. But,
> the same transformation didn't work even when I used exactly the same
> partial volume again and applied the saved shadow transform. As I told you
> before, all I got was all black backgrounds. I reset the display range,
> but that didn't help.
>
> Hackjin.
>
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