Hi,
On 27 Feb 2009, at 13:15, Elisabeth Jonckers wrote:
> Dear,
>
> Thank you very much for your quick respond. I’m doing now the single
> session
> Melodic for each of my subjects.
> I’m not so familiar with using these command lines so I have a new
> question…You said I could do fslcc between two sets of melodic_IC
> data.
> Could I also compare to a mask, made in WFU pickatlas. I have an img
> and a
> hdr file of it…
Yes - you can use fslcc between any 3D or 4D image and any other 3D or
4D as long as it is the same size in the 3 spatial dimensions.
> So do I have to enter? Fslcc <melodic_IC> <nameofmask> [cc-tresh]
> What do I have to do with the last part of the command line?
For the threshold either leave that blank (and I think it will then be
0.1) or set this - e.g. to 0 to see all possible results.
Cheers.
>
> And a similar question as was mentioned today…Which files do I have
> to use
> in the second level analysis?
>
> Thank you,
>
> Elisabeth Jonckers
>
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Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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