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CCP4BB  July 2018

CCP4BB July 2018

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Subject:

Re: Last few months updates, updated coot, ccp4i2, imosflm, etc

From:

Jan Stransky <[log in to unmask]>

Reply-To:

Jan Stransky <[log in to unmask]>

Date:

Sat, 7 Jul 2018 19:52:56 +0200

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (180 lines)

Dear Charles,
is there a plan to release new base package of CCP4 which would contain
all updates, so we don't have to go through the already quite lengthy
update process with new installations?
Best regards,
Jan

On 07/05/2018 03:15 PM, Ballard, Charles (STFC,RAL,CSE) wrote:
> For those of you not applying updates, the last few months updates have
> included
> 
> * phaser 2.8
> * ccp4i2 
> * dials 1.9 (1.10 coming soon)
> * ccp4mg
> * coot 0.8.9.1 
>  * imosflm/ipmosfm 7.2.2
> 
> plus interfaces to simbad, ample arcimboldo, and a dials gui DUI
> 
> Update ID: 7.0.050
> Date: 17.01.18
> 
> Component 	Description 	Mac OS 64-bit	Linux 32-bit	Linux 64-bit	Windows
> 32-bit	Windows 64-bit
> coot	0.8.9	yes	yes	yes	-	-
> aimless	0.6.2	yes	yes	yes	yes	yes
> 
> 
> Update ID: 7.0.051
> Date: 09.02.18
> 
> Component 	Description 	Mac OS 64-bit	Linux 32-bit	Linux 64-bit	Windows
> 32-bit	Windows 64-bit
> phaser	2.8.2	yes	yes	yes	yes	yes
> ccp4i	updates for phaser 2.8	yes	yes	yes	yes	yes
> arcimboldo	updates for phaser 2.8	yes	yes	yes	yes	yes
> ample	update to 1.4.1	yes	yes	yes	yes	yes
> simbad	update to 0.1.10	yes	yes	yes	-	-
> dials	update to 1.8.4	yes	yes	yes	yes	yes
> ccp4i	update for ample	yes	yes	yes	yes	yes
> 
> Update ID: 7.0.052
> Date: 28.02.18
> 
> Component 	Description 	Mac OS 64-bit	Linux 32-bit	Linux 64-bit	Windows
> 32-bit	Windows 64-bit
> ccp4i2	Numerous bug fixes, improvments to stability, speed and
> efficiency	yes	yes	yes	yes	yes
> 	New: Arcimboldo	yes	yes	yes	-	-
> 	New: Simbad	yes	yes	yes	-	-
> 	New: Ample	yes	yes	yes	yes	yes
> 	Enhancements to existing interfaces	yes	yes	yes	yes	yes
> 	New crystal definition and interface introduced	yes	yes	yes	yes	yes
> 
> Update ID: 7.0.053
> Date: 19.03.18
> 
> Component 	Description 	Mac OS 64-bit	Linux 32-bit	Linux 64-bit	Windows
> 32-bit	Windows 64-bit
> ccp4mg	fix issues with some refmac output	yes	yes	yes	yes	yes
> pointless	update to 1.11.10, read nXDS files	yes	yes	yes	yes	yes
> buccaneer	Bug fixes	yes	yes	yes	yes	yes
> refmac	Bug fixes and speed enhancements	yes	yes	yes	yes	yes
> crank2	Bug fixes and enhancements	yes	yes	yes	yes	yes
> arcimboldo	Bug fixes	yes	yes	yes	yes	yes
> molrep	Bug fies	yes	yes	yes	yes	yes
> fragon	0.1.0, MR pipeline	yes	yes	yes	-	-
> acedrg	New features and bug fixes	yes	yes	yes	yes	yes
> rabdam	radition damage detection, command line only	yes	yes	yes	yes	yes
> clipper	bug fix in mtz writing routine	yes	yes	yes	yes	yes
> morda	database update 21	yes	yes	yes	yes	yes
> 
> Update ID: 7.0.054
> Date: 29.03.18
> 
> Component 	Description 	Mac OS 64-bit	Linux 32-bit	Linux 64-bit	Windows
> 32-bit	Windows 64-bit
> shelxe	bug fixes	yes	yes	yes	yes	yes
> 	correction to shelxe NCS code	yes	yes	yes	yes	yes
> monomers	additional ligands	yes	yes	yes	yes	yes
> simbad	lattice and contaminant search	-	-	-	yes	yes
> ccp4i2	new auspex interface	yes	yes	yes	yes	yes
> 	new simbad interface	-	-	-	yes	yes
> 	updated refmac interface	yes	yes	yes	yes	yes
> 	updated lorestr interface	yes	yes	yes	yes	yes
> 	updates arpwarp interface	yes	yes	yes	-	-
> mosflm	ipmosflm 7.2.2	yes	yes	yes	yes	yes
> 	imosflm 7.2.2	yes	yes	yes	yes	yes
> arcimboldo	update for new shelxe	yes	yes	yes	-	-
> refmac	fixed output coordinates in mmcif file	yes	yes	yes	yes	yes
> 
> Update ID: 7.0.055
> Date: 16.04.18
> 
> Component 	Description 	Mac OS 64-bit	Linux 32-bit	Linux 64-bit	Windows
> 32-bit	Windows 64-bit
> coot	0.8.9.1	yes	yes	yes	-	-
> xssp	3.0.0	yes	yes	yes	yes	yes
> rabdam	Bug fixes	yes	yes	yes	yes	yes
> srs	synchronise to monomer library	yes	yes	yes	yes	yes
> ccp4i2	workaround for batch file launch issues	-	-	-	yes	yes
> 
> 
> Update ID: 7.0.056
> Date: 27.04.18
> 
> Component 	Description 	Mac OS 64-bit	Linux 32-bit	Linux 64-bit	Windows
> 32-bit	Windows 64-bit
> monomers	corrections for ASN etc	yes	yes	yes	yes	yes
> dui	New interface for DIALS	yes	yes	yes	yes	yes
> cctbx	Update to 2018 January	yes	yes	yes	yes	yes
> phaser	Update to 2.8.2	yes	yes	yes	yes	yes
> dials	Update to 1.9.2	yes	yes	yes	yes	yes
> xia2	Update to 0.5.542	yes	yes	yes	yes	yes
> aimless	Update to 0.7.1	yes	yes	yes	yes	yes
> ccp4i	correction to phaser atom search interface	yes	yes	yes	yes	yes
> imosflm	correction to running of pointless and aimless	-	-	-	yes	yes
> ccp4i2	updated xia2 interfaces	yes	yes	yes	yes	yes
> 
> 
> Update ID: 7.0.057
> Date: 09.05.18
> 
> Component 	Description 	Mac OS 64-bit	Linux 32-bit	Linux 64-bit	Windows
> 32-bit	Windows 64-bit
> coot	Minor fixes	yes	yes	yes	-	-
> pointless	update to 1.11.12	yes	yes	yes	yes	yes
> dui	workaround for FPE issue	yes	yes	yes	yes	yes
> ccp4i	phaser MR interface update	yes	yes	yes	yes	yes
> 	mrbump interface update	yes	yes	yes	yes	yes
> ccp4i2	crank2 interface update	yes	yes	yes	yes	yes
> 	refmac inteface update	yes	yes	yes	yes	yes
> 	lorestr interface update	yes	yes	yes	yes	yes
> 	prosmart inteface update	yes	yes	yes	yes	yes
> mrbump	update	yes	yes	yes	yes	yes
> truncate	serious issue with F/sigF (thanks Global Phasing team for
> fix)	yes	yes	yes	yes	yes
> 
> Update ID: 7.0.058
> Date: 08.06.18
> 
> Component 	Description 	Mac OS 64-bit	Linux 32-bit	Linux 64-bit	Windows
> 32-bit	Windows 64-bit
> ccp4i2	bug fixes	yes	yes	yes	yes	yes
> ccp4mg	fix for atom picking issue	yes	yes	yes	yes	yes
> dials	update to 1.9.3	yes	yes	yes	yes	yes
> aimless	Bug fixes	yes	yes	yes	yes	yes
> ctruncate	Bug fixes	yes	yes	yes	yes	yes
> refmac5	fixes for conn issue and mask issue	yes	yes	yes	yes	yes
> 	increased stacksize for EM maps	yes	-	-	-	-
> ample	update to 1.4.4	yes	yes	yes	yes	yes
> arcimboldo	fixes to Borges and Shredder	yes	yes	yes	-	-
> panddas	update to 0.2.12, runs with new cctbx	yes	yes	yes	-	-
> 
> Update ID: 7.0.059
> Date: 03.07.18
> 
> Component 	Description 	Mac OS 64-bit	Linux 32-bit	Linux 64-bit	Windows
> 32-bit	Windows 64-bit
> crank2	various fixes and updates	yes	yes	yes	yes	yes
> ccp4i	updates to crank2 interface	yes	yes	yes	yes	yes
> coot	fix for his-flip issues	yes	yes	yes	-	-
> phaser	removal of .git directory, FPE issues	yes	-	-	-	-
> ccp4i2	fix for cache files	yes	yes	yes	yes	yes
> 	updates to crank2 interface	yes	yes	yes	yes	yes
> enum34	updated support library in python
> 
> 
> 
> ------------------------------------------------------------------------
> 
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