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Subject:

Re: Introducing Dials User Interface for CCP4

From:

"[log in to unmask]" <[log in to unmask]>

Reply-To:

[log in to unmask]

Date:

Thu, 10 May 2018 13:03:49 +0000

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (238 lines)

Hi guys,


You may try now, after the new update, to run "dui" without the two commands I told you before.


Please let me know if it fails again.


Thanks,


Luiso

________________________________
From: CCP4 bulletin board <[log in to unmask]> on behalf of Martín Martinez Ripoll <[log in to unmask]>
Sent: 08 May 2018 11:27:57
To: ccp4bb
Subject: Re: [ccp4bb] Introducing Dials User Interface for CCP4

It also runs for us!

Thanks
_________________________________________
Dr. Martin Martinez-Ripoll
Research Professor Emeritus
[log in to unmask]
Department of Crystallography & Structural Biology
www.xtal.iqfr.csic.es<http://www.xtal.iqfr.csic.es>
www.xtal.iqfr.csic.es/Cristalografia/<http://www.xtal.iqfr.csic.es/Cristalografia/>
Telf.: +34 917459550
Consejo Superior de Investigaciones Científicas
Spanish National Research Council


-----Mensaje original-----
De: CCP4 bulletin board <[log in to unmask]> En nombre de Sebastiano
Pasqualato
Enviado el: lunes, 07 de mayo de 2018 18:27
Para: [log in to unmask]
Asunto: Re: [ccp4bb] Introducing Dials User Interface for CCP4

works now!
thanks a lot,
s

> On 07 May 2018, at 17:08, [log in to unmask]
<[log in to unmask]> wrote:
>
> Try typing the next two commands in your terminal before running "dui":
>
>
> export BOOST_ADAPTBX_FPE_DEFAULT=1
> export BOOST_ADAPTBX_SIGNALS_DEFAULT=1
>
>
> This hack is NOT supposed to be needed, we should fix it with the next
update.
>
>
> Thanks,
>
>
> Luiso
>
> ________________________________
> From: CCP4 bulletin board <[log in to unmask]> on behalf of Martín
> Martinez Ripoll <[log in to unmask]>
> Sent: 07 May 2018 14:48:11
> To: ccp4bb
> Subject: Re: [ccp4bb] Introducing Dials User Interface for CCP4
>
> Hi Luis,
>
> The same problem reported by Sebastiano (see below) regarding DUI (Dials
User Interface) occurs using Mac OSX 10.13.4 and older Quartz 2.7.9.
>
> Regards,
> Martin
> _________________________________________
> Dr. Martin Martinez-Ripoll
> Research Professor Emeritus
> [log in to unmask]<mailto:[log in to unmask]>
> Department of Crystallography & Structural Biology
> www.xtal.iqfr.csic.es<http://www.xtal.iqfr.csic.es/<http://www.xtal.iqfr.csic.es<http://www.xtal.iqfr.csic.es/>>
> www.xtal.iqfr.csic.es/Cristalografia/<http://www.xtal.iqfr.csic.es/Cri<http://www.xtal.iqfr.csic.es/Cristalografia/<http://www.xtal.iqfr.csic.es/Cri>
> stalografia/>
> Telf.: +34 917459550
> Consejo Superior de Investigaciones Científicas Spanish National
> Research Council [cid:[log in to unmask]]
>
> De: CCP4 bulletin board <[log in to unmask]> En nombre de
> Sebastiano Pasqualato Enviado el: lunes, 07 de mayo de 2018 13:43
> Para: [log in to unmask]
> Asunto: Re: [ccp4bb] Introducing Dials User Interface for CCP4
>
>
> Hi Luis,
> I’m trying to run the Dials user Interface on a Mac (OSX version 10.11.6,
Quartz 2.7.11).
> i go into the directory where the images are, launch the dui and the
graphical user interface appears, without any image displayed.
> When I click on the “select images” button, the program crashes with this
error message (in red).
> Any hints on what is happening?
> Thanks,
> s
>
> spasqual@host065:~/Desktop/esrf_05052018/IEO_x2/data> dui running
> Python version of lst_ext C++ Module sys_arg.template= None
> sys_arg.directory= None
> str(e) = [Errno 2] No such file or directory: 'dials_files/bkp.pickle'
> e.__doc__ = I/O operation failed.
> e.message =
> creating new DialsCommand (obj)
>
> Running process on  posix
>
>
> creating new DialsCommand (obj)
>
> Running process on  posix
>
>
> root_node.lin_num = 0
>
> status
> |  lin num
> |   |  command
> |   |   |
> ------------------
> S   0   \___Root
> N   1         \___None        <<< here
> ---------------------------
> TreeNavWidget(__init__)
> idials_gui_path =
> /Applications/ccp4-7.0/lib/py2/site-packages/mini_idials_w_GUI
> The " output " set of parameters is automatically handled by idials
> The " output " set of parameters is automatically handled by idials
> The " output " set of parameters is automatically handled by idials
> The " output " set of parameters is automatically handled by idials
> The " output " set of parameters is automatically handled by idials
> sys_arg_in = <mini_idials_w_GUI.main_dui.SysArgvData object at
> 0x113716590> unable to update data panel
>
> turning log fonts to GREEN
>
> QWebSettings.JavascriptEnabled = 1
> No need to load HTML file yet
>
>
> no datablock given
>
> No pickle file given
> Unable to calculate mean and adjust contrast test
> setStyle(QStyleFactory.create())
> 1
> failed to << check_gray_outs() >>
> tmp_curr.lin_num == 1
> templ_text =  ?
> update_pbar_msg = click << Select File(s) >> or edit input line libc
> backtrace (-1 frames, most recent call last):
> Segmentation fault (sorry, call stacks not available)
>                This crash may be due to a problem in any imported
>                Python module, including modules which are not part
>                of the cctbx project. To disable the traps leading
>                to this message, define these environment variables
>                (e.g. assign the value 1):
>                    BOOST_ADAPTBX_FPE_DEFAULT
>                    BOOST_ADAPTBX_SIGNALS_DEFAULT
>                This will NOT solve the problem, just mask it, but
>                may allow you to proceed in case it is not critical.
> spasqual@host065:~/Desktop/esrf_05052018/IEO_x2/data>
>
>
> On 02 May 2018, at 17:37,
[log in to unmask]<mailto:[log in to unmask]
>
<[log in to unmask]<mailto:[log in to unmask]
k>> wrote:
>
> Dear ccp4bb,
>
> I am happy to introduce you to the new Dials User Interface (DUI) for
CCP4.
>
> DUI is a graphical user interface that is designed to make data processing
with DIALS more user-friendly and efficient. A key feature is a full history
tree that keeps track of all steps of processing. Every position in the tree
represents the execution of a DIALS command line with full record of the
user-supplied parameters, and the results, which can be inspected with
several visualisation tools. At any step, the user can either fork, proceed
to the next command or navigate to another step without loss of information.
This ability to keep track of different branches of data processing gives
the user freedom to explore different hypotheses, such as the space group of
the crystal.
>
> DUI is intended to be intuitive and immediately useful across a wide range
of user expertise. Beginners learning about the integration process with
DIALS will benefit from the ease-of-use of the GUI and the visualisation
tools. Experts retain full control of the underlying DIALS programs and can
use the history tree to test different ideas quickly.
>
> DUI does not have a launcher from ccp4i2 yet, but you can launch it by
just typing dui from your terminal. I would recommend to cd to the directory
with your images first. And of course have updated CCP4 to the latest
version.
>
> Enjoy!
>
> Thanks,
>
> Luis Fuentes-Montero (Luiso)
>
>
> --
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you are not the intended addressee or an authorised recipient of the
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not necessarily of Diamond Light Source Ltd.
> Diamond Light Source Ltd. cannot guarantee that this e-mail or any
attachments are free from viruses and we cannot accept liability for any
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> Kingdom

-- 
This e-mail and any attachments may contain confidential, copyright and or privileged material, and are for the use of the intended addressee only. If you are not the intended addressee or an authorised recipient of the addressee please notify us of receipt by returning the e-mail and do not use, copy, retain, distribute or disclose the information in or attached to the e-mail.
Any opinions expressed within this e-mail are those of the individual and not necessarily of Diamond Light Source Ltd. 
Diamond Light Source Ltd. cannot guarantee that this e-mail or any attachments are free from viruses and we cannot accept liability for any damage which you may sustain as a result of software viruses which may be transmitted in or with the message.
Diamond Light Source Limited (company no. 4375679). Registered in England and Wales with its registered office at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom

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