Dear Barney,
if you run DICOM import via "Batch->SPM->Util->DICOM import", you will
have a choice of different output options. Each of them except "flat"
will sort the NIfTI images into folders named after the protocol names
from the DICOM headers.
Hope this helps,
Volkmar
<https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind0907&L=SPM&Y=volkmar.glauche%40uniklinik-freiburg.de&P=217992>
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