If you use -omatrix2 with a whole brain mask as target2, then the resulting matrix will store one fdt_paths per seed as rows of the matrix.
Cheers
Saad
> On 17 Aug 2017, at 21:39, Max Bertolero <[log in to unmask]> wrote:
>
> Is there a way to get a separate fdt_paths.nii image for each seed, so that, for each seed to seed, I know the most common voxels that the tracts went through?
>
> I am guessing that --otargetpaths might do this, but it seems to use a ton of memory to run.
>
> Thanks!
>
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