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FSL  July 2009

FSL July 2009

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Subject:

Re: registration problem within MELODIC

From:

"David V. Smith" <[log in to unmask]>

Reply-To:

FSL - FMRIB's Software Library <[log in to unmask]>

Date:

Thu, 30 Jul 2009 14:24:32 -0400

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (87 lines)

I think dim4 should be time... I'm not sure what the other dimensions are
for... Try editing the header to correct the missing/incorrect info.

David



-----Original Message-----
From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf
Of Lisa Eyler
Sent: Thursday, July 30, 2009 2:20 PM
To: [log in to unmask]
Subject: Re: [FSL] registration problem within MELODIC

Thanks for the suggestion.  It looks like it "sees" that dim5 = 67 (which is
the number of time points) but the time_units are Unknown.  Is dim5 usually
time, or is it dim4?  Perhaps I should use fsledithd to fill in some of the
blanks?  I've also posted on the AFNI list to see if there's anything I can
do on that side of things.

Lisa

sizeof_hdr     348
data_type      FLOAT32
dim0           5
dim1           64
dim2           64
dim3           31
dim4           1
dim5           67
dim6           1
dim7           1
vox_units      mm
time_units     Unknown
datatype       16
nbyper         4
bitpix         32
pixdim0        0.0000000000
pixdim1        4.0000000000
pixdim2        4.0000000000
pixdim3        4.0000000000
pixdim4        1.0000000000
pixdim5        1.0000000000
pixdim6        0.0000000000
pixdim7        0.0000000000
vox_offset     7536
cal_max        0.0000
cal_min        0.0000
scl_slope      0.000000
scl_inter      0.000000
phase_dim      0
freq_dim       0
slice_dim      0
slice_name     Unknown
slice_code     0
slice_start    0
slice_end      0
slice_duration 0.000000
time_offset    0.000000
intent         Unknown
intent_code    0
intent_name
intent_p1      0.000000
intent_p2      0.000000
intent_p3      0.000000
qform_name     Scanner Anat
qform_code     1
qto_xyz:1      -4.000000  0.000000  -0.000000  130.417007
qto_xyz:2      0.000000  -4.000000  -0.000000  154.716995
qto_xyz:3      0.000000  0.000000  -4.000000  87.712196
qto_xyz:4      0.000000  0.000000  0.000000  1.000000
qform_xorient  Right-to-Left
qform_yorient  Anterior-to-Posterior
qform_zorient  Superior-to-Inferior
sform_name     Scanner Anat
sform_code     1
sto_xyz:1      -4.000000  0.000000  0.000000  130.417007
sto_xyz:2      0.000000  -4.000000  0.000000  154.716995
sto_xyz:3      0.000000  0.000000  -4.000000  87.712196
sto_xyz:4      0.000000  0.000000  0.000000  1.000000
sform_xorient  Right-to-Left
sform_yorient  Anterior-to-Posterior
sform_zorient  Superior-to-Inferior
file_type      NIFTI-1+
file_code      1
descrip
aux_file

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