JiscMail Logo
Email discussion lists for the UK Education and Research communities

Help for FSL Archives


FSL Archives

FSL Archives


FSL@JISCMAIL.AC.UK


View:

Message:

[

First

|

Previous

|

Next

|

Last

]

By Topic:

[

First

|

Previous

|

Next

|

Last

]

By Author:

[

First

|

Previous

|

Next

|

Last

]

Font:

Proportional Font

LISTSERV Archives

LISTSERV Archives

FSL Home

FSL Home

FSL  November 2008

FSL November 2008

Options

Subscribe or Unsubscribe

Subscribe or Unsubscribe

Log In

Log In

Get Password

Get Password

Subject:

Re : [FSL] FSL-VBM Problem

From:

Gwenaëlle DOUAUD <[log in to unmask]>

Reply-To:

FSL - FMRIB's Software Library <[log in to unmask]>

Date:

Mon, 24 Nov 2008 14:56:38 +0000

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (74 lines)

Hi Erick,

could you please copy/paste the content of your design.mat and design.con files?

Cheers,
Gwenaelle


--- En date de : Lun 24.11.08, Erick Canales Rodriguez (Benito Menni CASM) <[log in to unmask]> a écrit :

> De: Erick Canales Rodriguez (Benito Menni CASM) <[log in to unmask]>
> Objet: [FSL] FSL-VBM Problem
> À: [log in to unmask]
> Date: Lundi 24 Novembre 2008, 14h52
> Hello FSL,
> 
> I am attempting to do a VBM analysis using the instructions
> from the FSL-VBM v1.1 homepage, however, I am having
> problems at the last stage of analysis.
> The script:  "fslvbm_3_proc" works properly, it
> creates the 4D GM images "GM_mod_merg".
> My problem arise in the last step: "Displaying
> cluster-based thresholding results". In particular,
> with the randomise function:
> 
> randomise -i GM_mod_merg_s3 -m GM_mask -o fslvbm -d
> design.mat -t design.con -c 2.3 -n 5000 -V
> 
> It produces all the iterations for the permutation test
> corresponding to the tstat1 images, which are shown in the
> linux terminal (for example, 5000 iterations), however, only
> two iterations are produced for the tstat2 analysis. It
> seems as if the algorithm was caught in a local minimum at
> the second iteration.
> 
> However, with other set of structural data (in the order of
> 70 subjects) FSL-VBM works fine in my machine...
> 
> Can anyone tell me how to solve this problem? In aparience
> all the T1 images used in my study are OK.
> 
> All the best,
> 
> Erick J. Canales-Rodríguez
> 
> (+34) 93 652 99 99 ext. 255
> 
> Unitat de Recerca, Benito Menni CASM
> (http://www.hospitalbenitomenni.org/Default.aspx)
> Sant Boi del Llobregat (Barcelona), Espanya/España/Spain
> 
> Benito Menni Complex assistencial en Salut Mental
> ________________________________
> 
> ________________________________
> Este mensaje se dirige exclusivamente a su destinatario y
> puede contener información privilegiada o confidencial. Si
> no es vd. el destinatario indicado, queda notificado de que
> la utilización, divulgación y/o copia sin autorización
> está prohibida en virtud de la legislación vigente. Si ha
> recibido este mensaje por error, le rogamos que nos lo
> comunique inmediatamente por esta misma vía y proceda a su
> destrucción.
> 
> Aquest missatge va dirigit exclusivament al seu destinatari
> i pot contenir informació privilegiada o confidencial. Si
> vosté no és el destinatari indicat, li notifiquem que la
> utilització, divulgació i/o còpia sense autorització
> està prohibida en virtud de la legislació vigent. Si ha
> rebut aquest missatge per error, li preguem que ens ho
> comuniqui el més aviat possible.


      

Top of Message | Previous Page | Permalink

JISCMail Tools


RSS Feeds and Sharing


Advanced Options


Archives

April 2014
March 2014
February 2014
January 2014
December 2013
November 2013
October 2013
September 2013
August 2013
July 2013
June 2013
May 2013
April 2013
March 2013
February 2013
January 2013
December 2012
November 2012
October 2012
September 2012
August 2012
July 2012
June 2012
May 2012
April 2012
March 2012
February 2012
January 2012
December 2011
November 2011
October 2011
September 2011
August 2011
July 2011
June 2011
May 2011
April 2011
March 2011
February 2011
January 2011
December 2010
November 2010
October 2010
September 2010
August 2010
July 2010
June 2010
May 2010
April 2010
March 2010
February 2010
January 2010
December 2009
November 2009
October 2009
September 2009
August 2009
July 2009
June 2009
May 2009
April 2009
March 2009
February 2009
January 2009
December 2008
November 2008
October 2008
September 2008
August 2008
July 2008
June 2008
May 2008
April 2008
March 2008
February 2008
January 2008
December 2007
November 2007
October 2007
September 2007
August 2007
July 2007
June 2007
May 2007
April 2007
March 2007
February 2007
January 2007
2006
2005
2004
2003
2002
2001


WWW.JISCMAIL.AC.UK

Secured by F-Secure Anti-Virus CataList Email List Search Powered by the LISTSERV Email List Manager