JiscMail Logo
Email discussion lists for the UK Education and Research communities

Help for FSL Archives


FSL Archives

FSL Archives


FSL@JISCMAIL.AC.UK


View:

Message:

[

First

|

Previous

|

Next

|

Last

]

By Topic:

[

First

|

Previous

|

Next

|

Last

]

By Author:

[

First

|

Previous

|

Next

|

Last

]

Font:

Proportional Font

LISTSERV Archives

LISTSERV Archives

FSL Home

FSL Home

FSL  2004

FSL 2004

Options

Subscribe or Unsubscribe

Subscribe or Unsubscribe

Log In

Log In

Get Password

Get Password

Subject:

AW: [FSL] FEEDS w/ WinXP

From:

Andreas Bartsch <[log in to unmask]>

Reply-To:

FSL - FMRIB's Software Library <[log in to unmask]>

Date:

Thu, 4 Nov 2004 07:27:00 +0100

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (1 lines)

Does cygwin reside the same partition as XP? Try to let the system administer the swap space. Alternatively, increase swap to 2 GB.

On my WinXP machine (1.7 Dothan, 1GB physical RAM) this eventually helped. 

Best regards-

Andreas



	-----Urspr√ľngliche Nachricht----- 

	Von: Bennett Landman [mailto:[log in to unmask]] 

	Gesendet: Do 04.11.2004 00:00 

	An: Bartsch, Andreas; 'FSL - FMRIB's Software Library' 

	Cc: 

	Betreff: RE: [FSL] FEEDS w/ WinXP

	

	



	First, thanks for getting back to me.

	

	I upgraded the machine to 1 GB of physical RAM and 1.5 GB of swap space

	(with an additional 3 GB of free space left on the drive). I reran the FEEDS

	test suite and am still getting the same error (see below). Is there a way

	to show that this is a memory problem? (I do not see any errors saying that

	I am running low on virtual memory.)

	

	I appreciate your help,

	Bennett Landman

	[log in to unmask]

	

	

	bennett@M205 /usr/local/feeds

	$ ./RUN bet2

	

	FSL Evaluation and Example Data Suite v3.2

	

	start time = Wed Nov  3 17:04:14 EST 2004

	hostname = M205

	os = CYGWIN_NT-5.1 M205 1.5.11(0.116/4/2) 2004-09-04 23:17 i686 unknown

	unknow

	n Cygwin

	

	

	/bin/rm -rf /usr/local/feeds/results ; mkdir /usr/local/feeds/results

	

	

	Starting BET2 at Wed Nov  3 17:04:15 EST 2004

	checking error on T1 brain extraction:

	% error = 0.0

	checking error on skull and scalp surfaces:

	No output image created

	Warning - test failed!

	No output image created

	Warning - test failed!

	No output image created

	Warning - test failed!

	

	Warning - not all tests passed

	

	end time = Wed Nov  3 17:30:21 EST 2004

	

	

	-----Original Message-----

	From: Andreas Bartsch [mailto:[log in to unmask]]

	Sent: Monday, November 01, 2004 10:29 AM

	Subject: AW: [FSL] FEEDS w/ WinXP

	

	Hi Bennett-

	

	this is related to deficient memory preventing the generation of skull +

	scalp surface images.

	Increase virtual memory of let the system administer its size. That should

	do it - at least if you have a minimum of 1GB physical RAM.

	Best regards-

	Andreas

	

	

	        -----Urspr√ľngliche Nachricht-----

	        Von: Bennett Landman [mailto:[log in to unmask]]

	        Gesendet: Mo 01.11.2004 13:18

	        An: [log in to unmask]

	        Cc:

	        Betreff: [FSL] FEEDS w/ WinXP

	       

	       

	

	        Good morning,

	       

	        My FEEDS validation suite is failing for the BET2 surfaces under

	winXP.

	        (Full feeds output included below.) I also installed the complete

	cygwin

	        kit (as per the last message on this topic), but the problem

	persists. I'd

	        very much appreciate any help setting up FSL under winXP.

	       

	        Thanks,

	        Bennett Landman

	        [log in to unmask]

	       

	        bennett@M205/usr/local/feeds

	        $ time ./RUN all

	       

	        FSL Evaluation and Example Data Suite v3.2

	       

	        start time = Sun Oct 31 22:42:49 EST 2004

	        hostname = M205

	        os = CYGWIN_NT-5.1 M205 1.5.11(0.116/4/2) 2004-09-04 23:17 i686

	unknown

	        unknow

	        n Cygwin

	       

	       

	        /bin/rm -rf /usr/local/feeds/results ; mkdir

	/usr/local/feeds/results

	       

	       

	        Starting PRELUDE & FUGUE at Sun Oct 31 22:42:53 EST 2004

	        % error = 0.0

	        % error = 0.0

	       

	        Starting SUSAN at Sun Oct 31 22:43:02 EST 2004

	        % error = 0.0

	       

	        Starting SIENAX (including testing BET and FLIRT and FAST) at Sun

	Oct 31

	        22:46:1

	        8 EST 2004

	        checking error on BET:

	        % error = 0.0

	        checking error on FLIRT:

	        % error = 0.33

	        checking error on FAST:

	        checking error on single-image binary segmentation:

	        % error = 0.4

	        checking error on partial volume images:

	        % error = 0.38

	        % error = 0.26

	        % error = 0.24

	        checking error on SIENAX volume outputs:

	        % error = 0.09

	        % error = 0.0

	        % error = 0.05

	        % error = 0.05

	        % error = 0.1

	       

	        Starting BET2 at Sun Oct 31 23:05:04 EST 2004

	        checking error on T1 brain extraction:

	        % error = 0.0

	        checking error on skull and scalp surfaces:

	        No output image created

	        Warning - test failed!

	        No output image created

	        Warning - test failed!

	        No output image created

	        Warning - test failed!

	       

	        Starting FEAT at Sun Oct 31 23:39:32 EST 2004

	        checking error on filtered functional data:

	        % error = 0.21

	        checking error on raw Z stat images:

	        % error = 0.26

	        % error = 0.22

	        % error = 0.28

	        checking error on thresholded Z stat images:

	        % error = 0.21

	        % error = 0.27

	        % error = 0.33

	        checking error on position of largest cluster of Talairached

	zfstat1:

	        % error = 0.01

	        % error = 0.02

	        % error = 0.08

	        % error = 0.01

	        % error = 0.0

	        % error = 0.04

	       

	        Starting MELODIC at Mon Nov  1 00:00:58 EST 2004

	        % error = 0.0

	       

	        Starting FDT (bedpost) at Mon Nov  1 00:21:50 EST 2004

	        checking error on bedpost output:

	        % error = 0.25

	        % error = 0.01

	        % error = 0.07

	        % error = 0.07

	        % error = 0.1

	        % error = 0.22

	        % error = 0.22

	       

	        Warning - not all tests passed

	       

	        end time = Mon Nov  1 01:07:15 EST 2004

	       

	       

	        real    144m32.312s

	        user    0m0.180s

	        sys     0m0.980s

	       

	



Top of Message | Previous Page | Permalink

JiscMail Tools


RSS Feeds and Sharing


Advanced Options


Archives

December 2019
November 2019
October 2019
September 2019
August 2019
July 2019
June 2019
May 2019
April 2019
March 2019
February 2019
January 2019
December 2018
November 2018
October 2018
September 2018
August 2018
July 2018
June 2018
May 2018
April 2018
March 2018
February 2018
January 2018
December 2017
November 2017
October 2017
September 2017
August 2017
July 2017
June 2017
May 2017
April 2017
March 2017
February 2017
January 2017
December 2016
November 2016
October 2016
September 2016
August 2016
July 2016
June 2016
May 2016
April 2016
March 2016
February 2016
January 2016
December 2015
November 2015
October 2015
September 2015
August 2015
July 2015
June 2015
May 2015
April 2015
March 2015
February 2015
January 2015
December 2014
November 2014
October 2014
September 2014
August 2014
July 2014
June 2014
May 2014
April 2014
March 2014
February 2014
January 2014
December 2013
November 2013
October 2013
September 2013
August 2013
July 2013
June 2013
May 2013
April 2013
March 2013
February 2013
January 2013
December 2012
November 2012
October 2012
September 2012
August 2012
July 2012
June 2012
May 2012
April 2012
March 2012
February 2012
January 2012
December 2011
November 2011
October 2011
September 2011
August 2011
July 2011
June 2011
May 2011
April 2011
March 2011
February 2011
January 2011
December 2010
November 2010
October 2010
September 2010
August 2010
July 2010
June 2010
May 2010
April 2010
March 2010
February 2010
January 2010
December 2009
November 2009
October 2009
September 2009
August 2009
July 2009
June 2009
May 2009
April 2009
March 2009
February 2009
January 2009
December 2008
November 2008
October 2008
September 2008
August 2008
July 2008
June 2008
May 2008
April 2008
March 2008
February 2008
January 2008
December 2007
November 2007
October 2007
September 2007
August 2007
July 2007
June 2007
May 2007
April 2007
March 2007
February 2007
January 2007
2006
2005
2004
2003
2002
2001


JiscMail is a Jisc service.

View our service policies at https://www.jiscmail.ac.uk/policyandsecurity/ and Jisc's privacy policy at https://www.jisc.ac.uk/website/privacy-notice

Secured by F-Secure Anti-Virus CataList Email List Search Powered by the LISTSERV Email List Manager