Dear Susanna,
I’ve been unable to replicate your “before” results ( my test replicates the “after” results ). How did you parallelise randomise on your cloud machine ( e.g. with randomise_parallel or some other method )? The results in ROIMilkModelNoFIbeforeFSLreinstall are quite strange: the *tstat1 images match the “after” results, but the _tstat7 “before” image also matches _tstat1 which implies the same contrast is being processe in both cases. This would imply some kind of structured issue in the before results.
Hope this helps,
Kind Regards
Matthew
--------------------------------
Dr Matthew Webster
FMRIB Centre
John Radcliffe Hospital
University of Oxford
> On 5 Jun 2019, at 15:31, Susanna Gobbi <[log in to unmask]> wrote:
>
> Dear Matthew,
> I have just upload the data.
>
> Thanks a lot for the help,
> Best,
>
> Susanna
>
> University of Zurich
> Department of Economics
> Blümlisalpstrasse 10, Room BLU-104
> 8006 Zurich
>
> Phone: +41 44 634 55 61
> Email: [log in to unmask]
>
>
> From: Matthew Webster
> Sent: 05 June 2019 14:47
> To: [log in to unmask]
> Subject: Re: [FSL] FSL randomise results changed after re-installing FSL
>
> Dear Susanna,
> Can you upload your original data (MilkshakeAll.nii) as well ( so we can replicate the analysis ) to:
>
> https://oxfile.ox.ac.uk/oxfile/work/extBox?id=700839B35190E48BF
>
> Kind Regards
> Matthew
> --------------------------------
> Dr Matthew Webster
> FMRIB Centre
> John Radcliffe Hospital
> University of Oxford
>
> > On 5 Jun 2019, at 10:32, Susanna Gobbi <[log in to unmask]> wrote:
> >
> > Dear Taylor,
> > Thanks a lot for your time and help. I have upload a folder called files with an example of the same analysis before and after the FSL reinstallation.
> >
> > Here my command
> > randomise -i ./SusannaStudy/MilkshakeAll.nii -o ./SusannaStudy/ResultsModel3/Milkshake/ROI/ -d ./SusannaStudy/designNoFI.mat -t ./SusannaStudy/designNoFI.con -m rROImask.nii -e ./SusannaStudy/design.grp -x --uncorrp -v 6 -T
> > Best,
> >
> > Susanna
> >
> > University of Zurich
> > Department of Economics
> > Blümlisalpstrasse 10, Room BLU-104
> > 8006 Zurich
> >
> > Phone: +41 44 634 55 61
> > Email: [log in to unmask]
> >
> >
> > From: Taylor Hanayik
> > Sent: 05 June 2019 10:26
> > To: [log in to unmask]
> > Subject: Re: [FSL] FSL randomise results changed after re-installing FSL
> >
> > Hi Susanna,
> >
> > We are looking into this some more. Would you be able to upload your “before” and “After” results for your randomise analysis? (After meaning after you updated FSL).
> >
> > You can upload to Oxford’s file sharing service here:
> >
> > https://oxfile.ox.ac.uk/oxfile/work/extBox?id=738200123033B05CFC
> >
> > Could you also reply back with the command you are using to start the randomise program?
> >
> > Thanks!
> >
> >
> > Cheers,
> >
> > Taylor Hanayik
> >
> >
> > Taylor Hanayik PhD
> > Analysis Research Software Engineer
> > FMRIB, John Radcliffe Hospital
> > University of Oxford
> > [log in to unmask]
> >
> >
> >
> >
> >
> >
> > On 4 Jun 2019, at 13:28, Susanna Gobbi <[log in to unmask]> wrote:
> >
> > https://oxfile.ox.ac.uk/oxfile/work/extBox?id=738200123033B05CFC
> >
> >
> > <8ED21B4141914192B2A6E9B4D639F53C.png>
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