Dear Brian,
Thank you very much for your kind reply.
The LUA script would be very useful.
Best regards,
Milán
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Tamás Milán Nagy
PhD student
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nmr.science.unideb.hu
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Institute of Chemistry
Department of Inorganic and Analytical Chemistry
NMR Laboratory, Chemistry Building, Room E-19
University of Debrecen
H-4032 Debrecen, Egyetem tér 1.
Hungary
Webpage: http://www.inorg.unideb.hu/oktatok/131
Phone: +36-52-512-900 ext. 22370
----- Eredeti üzenet -----
Feladó: "Brian Smith" <[log in to unmask]>
Címzett: "ccpnmr" <[log in to unmask]>
Elküldött üzenetek: Hétfő, 2018. december 10. 14:57:34
Tárgy: Re: CARA project
Hi Tamas,
It should be capable of doing what you want based on one of the exported formats. Had you already tried the TALOS+ LUA script listed here?
http://wiki.cara.nmr.ch/AllCaluaScripts
At a guess from your error report, you had read in chemical shifts, but not set up your molecule(s) in FormatConverter. You need to provide this information for the CCPN software to know what the chemical shifts refer to. You can do this by setting up your molecule(s) first, or by reading data that includes the sequence info at the same time. Several of the formats that you can export to from CARA should allow this.
Dr. Brian O. Smith --------------------------- Brian Smith at glasgow ac uk
Institute of Molecular, Cell and Systems Biology & School of Life Sciences,
College of Medical, Veterinary & Life Sciences,
Joseph Black Building, University of Glasgow, Glasgow G12 8QQ, UK.
Tel: 0141 330 5167/6459/3089
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The University of Glasgow, charity number SC004401
________________________________________
From: CcpNmr software mailing list [[log in to unmask]] on behalf of Nagy Tamás Milán [[log in to unmask]]
Sent: 10 December 2018 13:20
To: [log in to unmask]
Subject: CARA project
Dear Mr/Mrs,
I am wondering whether CCPN is somehow capable of importing a CARA project or just converting CARA chemical shift outputs (BMRB or CYANA format)
to a TALOS+ acceptable format (NMRpipe, TALOS...).
With FormatConverter I failed with an error message of missing project parameters:
"Could not set up export menu for project: no 'project.sortedMolSystems().sortedChains()' information available."
Waiting for your reply,
Milán
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Tamás Milán Nagy
PhD student
××××××××××××××
nmr.science.unideb.hu
××××××××××××××
Institute of Chemistry
Department of Inorganic and Analytical Chemistry
NMR Laboratory, Chemistry Building, Room E-19
University of Debrecen
H-4032 Debrecen, Egyetem tér 1.
Hungary
Webpage: http://www.inorg.unideb.hu/oktatok/131
Phone: +36-52-512-900 ext. 22370
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