JiscMail Logo
Email discussion lists for the UK Education and Research communities

Help for CCPEM Archives


CCPEM Archives

CCPEM Archives


CCPEM@JISCMAIL.AC.UK


View:

Message:

[

First

|

Previous

|

Next

|

Last

]

By Topic:

[

First

|

Previous

|

Next

|

Last

]

By Author:

[

First

|

Previous

|

Next

|

Last

]

Font:

Proportional Font

LISTSERV Archives

LISTSERV Archives

CCPEM Home

CCPEM Home

CCPEM  July 2018

CCPEM July 2018

Options

Subscribe or Unsubscribe

Subscribe or Unsubscribe

Log In

Log In

Get Password

Get Password

Subject:

Re: Creating map volume of custom size

From:

Paul Emsley <[log in to unmask]>

Reply-To:

Paul Emsley <[log in to unmask]>

Date:

Fri, 13 Jul 2018 10:42:10 +0100

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (32 lines)

On 13/07/2018 10:16, [log in to unmask] wrote:

> 
> 
> I want to use my map derived from X-ray diffraction and create a standard volume for it, say 300A3.
> 
> This is to be able to create slices of equal dimensions along all three directions of the electron density stored in the map file. Currently my slices differ in dimensions as the default volume is defined by the unit cell.
> 
> 
> I don't think there is anything in the map tools from the X-ray field I know. I had a play with Chimera and I think there is a tool in there to use some form of reference cell created from coordinates. But I don't want to make use of a coordinates file.
> 
> 
>

In Coot, there is

export_map_fragment(i, x, y, z, r, filename)

or

export_map_fragment_with_origin_shift(i, x, y, z, r, filename)

with r = 4.2 or some such

I am not sure that that is what you need, it sounds similar.

Paul.

########################################################################

To unsubscribe from the CCPEM list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCPEM&A=1

Top of Message | Previous Page | Permalink

JiscMail Tools


RSS Feeds and Sharing


Advanced Options


Archives

July 2018
June 2018
May 2018
April 2018
March 2018
February 2018
January 2018
December 2017
November 2017
October 2017
September 2017
August 2017
July 2017
June 2017
May 2017
April 2017
March 2017
February 2017
January 2017
December 2016
November 2016
October 2016
September 2016
August 2016
July 2016
June 2016
May 2016
April 2016
March 2016
February 2016
January 2016
December 2015
November 2015
October 2015
September 2015
August 2015
July 2015
June 2015
May 2015
April 2015
March 2015
February 2015
January 2015
December 2014
November 2014
October 2014
September 2014
August 2014
July 2014
June 2014
May 2014
April 2014
March 2014
February 2014
January 2014
December 2013
November 2013
October 2013
September 2013
August 2013
July 2013
June 2013
May 2013
April 2013
March 2013
February 2013


JiscMail is a Jisc service.

View our service policies at https://www.jiscmail.ac.uk/policyandsecurity/ and Jisc's privacy policy at https://www.jisc.ac.uk/website/privacy-notice

Secured by F-Secure Anti-Virus CataList Email List Search Powered by the LISTSERV Email List Manager