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Subject:

Relion 2.1.0 movie refinement error

From:

Clemens Grimm <[log in to unmask]>

Reply-To:

Clemens Grimm <[log in to unmask]>

Date:

Mon, 9 Jul 2018 05:18:24 +0000

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (42 lines)

Dear All,

I am encountering an error that occurs in movie refinement after  
successful extraction of the particle stacks from the movies:

ERROR:
MlModel::adjustGroupsForMovies ERROR: cannot find  
../FoilHole_7733465_Data_7733980_7733981_20180608_1549_aligned_sum_DW  
among the groups of the model!
File: /home/clemens/relion/src/ml_model.cpp line: 785

both, the *.mrc and the *_movie.mrcs files are at the indicated  
location. It seems that the problem has been described on Github:

https://github.com/3dem/relion/issues/105

It is caused by a missing file extension in a *.star file, however, I  
have not completely understood how to work around this.

Maybe someone else has found a workaround or a way to avoid this from  
the beginning?

Thanks for your help,
Clemens



--------------------------------------------------
Dr. Clemens Grimm
Institut für Biochemie
Biozentrum der Universität Würzburg
Am Hubland
D-97074 Würzburg
Germany
e-mail: [log in to unmask]
phone : +49 0931 31 84031
-------------------------------------------------

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