I'm unable to reproduce the error.
Can you try it in a temporary new account that doesn't have anything modified, and see if it works?
William G. Scott
Department of Chemistry and Biochemistry
and The Center for the Molecular Biology of RNA
228 Sinsheimer Laboratories
University of California at Santa Cruz
Santa Cruz, California 95064
On Aug 8, 2012, at 4:50 PM, Jinyi Zhu <[log in to unmask]> wrote:
> I recently upgrade to Mountain Lion and update fink following the official instructions. After that, CCP4, Phenix and pymol all run well without problems. However, I could not start Coot. The error message is as following:
> DEBUG:: stating pydirectory /sw/share/coot/python
> INFO:: importing coot.py from /sw/share/coot/python/coot.py
> Importing python module coot using command from coot import *
> INFO:: coot.py imported
> Fatal Python error: PyThreadState_Get: no current thread
> /sw/bin/coot: line 6: 66155 Abort trap: 6 /sw/bin/coot-real "$@"
> I have update all fink packages up to date and tried to re-install Coot by compiling after removing Coot completely. Does anyone have some good suggestion to make Coot work? Thanks!