JISCMail - CCPEM Archives

relion_image_handler issue

李华

Thu, 8 Nov 2018 03:27:38 +0000

50 lines

#ARVIND KUMAR KHANDELIA#

#ARVIND KUMAR KHANDELIA#

Fri, 30 Nov 2018 02:56:13 +0000

126 lines

FW: 3 postdoc positions available in Peijun zhang lab in Oxford

Sat, 10 Nov 2018 23:38:24 -0500

316 lines

Ali Punjani

Re: refining structure with a domain having hinge-motion movement

Ali Punjani

Wed, 21 Nov 2018 11:19:11 -0500

396 lines

Amer Alam

Relion-3-beta Polishing/B-factor fitting segmentation fault

Amer Alam

Mon, 26 Nov 2018 07:44:17 +0000

58 lines

Ashu Sharma

Bayesian polishing in Relion 3 and MotionCorr

Ashu Sharma

Thu, 29 Nov 2018 01:56:36 -0500

57 lines

Re: Bayesian polishing in Relion 3 and MotionCorr

Ashu Sharma

Thu, 29 Nov 2018 03:13:39 -0500

95 lines

Benjamin Apker

Cryo-EM Grid Box Storage - Input Desired

Benjamin Apker

Wed, 14 Nov 2018 16:43:22 -0500

184 lines

Bjoern Forsberg

Re: Backprojector::set2DSlice%%ERROR: Dimension of the data array should be 2 or 3 Relion-2.1

Bjoern Forsberg

Mon, 12 Nov 2018 08:08:37 +0100

407 lines

C. Batista Paulino

Re: checking the correct dose with relion 3 (or any other software)

C. Batista Paulino

Thu, 22 Nov 2018 14:49:43 +0100

86 lines

Re: relion job no.1000 (v2.1 and 3.0)

C. Batista Paulino

Thu, 15 Nov 2018 15:10:02 +0100

45 lines

Cathy Lawson

Joint Map and Model Challenges JSB Virtual Special Issue

Cathy Lawson

Tue, 27 Nov 2018 11:26:24 +0000

74 lines

Chan, Lieza (NIH/NIDDK) [F]

Aligning Particles

Chan, Lieza (NIH/NIDDK) [F]

Wed, 21 Nov 2018 16:31:10 +0000

117 lines

Re: Aligning Particles

Chan, Lieza (NIH/NIDDK) [F]

Wed, 21 Nov 2018 21:54:18 +0000

270 lines

Particle Pixel values

Chan, Lieza (NIH/NIDDK) [F]

Thu, 15 Nov 2018 21:07:08 +0000

109 lines

Chancievan Thangaratnarajah

Problem with 2D classification

Chancievan Thangaratnarajah

Sat, 10 Nov 2018 22:14:56 +0100

141 lines

Charles Bayly-Jones

Re: which symmetry to use

Charles Bayly-Jones

Fri, 23 Nov 2018 18:41:25 +1100

146 lines

Chen WeiFei

Which protein can be a standard for cryoEM experiment

Chen WeiFei

Tue, 20 Nov 2018 07:38:07 +0000

20 lines

Chia ([log in to unmask])

checking the correct dose with relion 3 (or any other software)

Chia ([log in to unmask])

Sun, 4 Nov 2018 03:43:33 +0000

28 lines

Chiara Rapisarda

Chiara Rapisarda

Thu, 22 Nov 2018 14:07:03 +0100

74 lines

Claudia Alen Amaro

Instruct Biennial Structural Biology Conference

Claudia Alen Amaro

Thu, 8 Nov 2018 12:05:38 +0000

124 lines

Ivana Bertini Award: call for nominations open

Claudia Alen Amaro

Wed, 14 Nov 2018 10:03:23 +0000

238 lines

Crina Nimigean

Postdoctoral position in ion channel mechanism with cryo-EM available in the laboratory of Crina Nimigean at Weill Cornell Medical College in New York City

Crina Nimigean

Tue, 13 Nov 2018 23:51:31 +0000

1209 lines

Da Cui

Motioncorr error in Relion3

Da Cui

Tue, 27 Nov 2018 23:23:16 +0000

81 lines

Danev, Radostin

Scientific Data Curator position (PDB and EMDB)

Danev, Radostin

Wed, 14 Nov 2018 00:30:56 +0000

85 lines

David Armstrong

David Armstrong

Thu, 15 Nov 2018 10:15:29 +0000

40 lines

De Biasio, Alfredo (Dr.)

Research technician position at the Leicester Institute of Structural and Chemical Biology

De Biasio, Alfredo (Dr.)

Fri, 16 Nov 2018 00:59:33 +0000

156 lines

Dieter Blaas

follow the evolution of autopicking?

Dieter Blaas

Tue, 6 Nov 2018 17:27:30 +0100

36 lines

Dong-Hua Chen

Re: invert map for correct handedness

Dong-Hua Chen

Wed, 31 Oct 2018 17:42:51 -0700

198 lines

Re: invert map for correct handedness

Dong-Hua Chen

Wed, 31 Oct 2018 18:26:30 -0700

241 lines

Eric Hanssen

uptime

Eric Hanssen

Sun, 25 Nov 2018 22:36:25 +0000

1460 lines

Eric Verbeke

pixel intensities in 2D class averages

Eric Verbeke

Fri, 30 Nov 2018 19:14:25 +0000

33 lines

Fengbin Wang

Re: Relion3 Refine3D --pad option

Fengbin Wang

Fri, 9 Nov 2018 22:48:21 +0000

34 lines

Gökhan Tolun

Post-doctoral position available

Gökhan Tolun

Fri, 16 Nov 2018 21:58:27 +1100

9404 lines

Gabriel Lander

Re: Problem with 2D classification

Gabriel Lander

Sat, 10 Nov 2018 13:40:23 -0800

172 lines

Gabriele Marchello

Relion MotionCor2

Gabriele Marchello

Thu, 8 Nov 2018 10:07:11 +0000

46 lines

Gaya Yadav

relion_ctf_refine

Gaya Yadav

Mon, 26 Nov 2018 17:32:56 +0000

77 lines

Goetz, Patrick G

Problems compiling Relion 3.0_beta

Goetz, Patrick G

Fri, 16 Nov 2018 22:01:54 +0000

70 lines

Grassucci, Robert

Associate Research Scientist for Cryo-Electron Microscopy Core Facility, Columbia University, New York, NY

Grassucci, Robert

Fri, 2 Nov 2018 17:49:07 +0000

206 lines

Hansen, Bryan (NIH/NIAID) [E]

2D classification error

Hansen, Bryan (NIH/NIAID) [E]

Thu, 8 Nov 2018 23:07:45 +0000

242 lines

Re: 2D classification error

Hansen, Bryan (NIH/NIAID) [E]

Fri, 9 Nov 2018 21:45:41 +0000

102 lines

Hasan, Syed Saif

Post-doctoral opportunity in membrane protein structural biology

Hasan, Syed Saif

Mon, 12 Nov 2018 21:07:29 +0000

146 lines

Heumann John

Re: Post-processing after refinement with solvent flattening?

Heumann John

Fri, 9 Nov 2018 08:32:27 -0700

131 lines

Re: Post-processing after refinement with solvent flattening?

Heumann John

Fri, 9 Nov 2018 10:12:51 -0700

142 lines

Hua Li

Bayesian polishing with combined dataset

Hua Li

Thu, 8 Nov 2018 00:45:52 +0000

24 lines

Huy Bui

Huy Bui

Fri, 2 Nov 2018 11:00:26 -0400

50 lines

Huy Bui

Fri, 2 Nov 2018 17:13:43 -0400

132 lines

Huy Bui

Fri, 9 Nov 2018 20:52:06 -0500

153 lines

Bayesian Polishing with GPU

Huy Bui

Sat, 10 Nov 2018 12:02:26 -0500

215 lines

Huy Bui

Mon, 12 Nov 2018 20:59:45 -0500

45 lines

Hyunwook Lee

Relion motioncor2 wrapper issue

Hyunwook Lee

Thu, 8 Nov 2018 12:39:41 -0500

31 lines

Re: Relion motioncor2 wrapper issue

Hyunwook Lee

Thu, 8 Nov 2018 13:21:51 -0500

69 lines

Irene Vercellino

Relion 3 bug

Irene Vercellino

Wed, 14 Nov 2018 13:46:47 +0100

29 lines

Jerry Wang

Relion3 Refine3D --pad option

Jerry Wang

Fri, 9 Nov 2018 20:30:48 +0000

31 lines

Joaquin Ortega, Dr.

Open position at McGill for a PDF in transmission electron microscopy - winter 2019

Joaquin Ortega, Dr.

Thu, 22 Nov 2018 02:21:14 +0000

4184 lines

Tenure-Track Assistant/Associate Professor Position at McGill

Joaquin Ortega, Dr.

Fri, 30 Nov 2018 04:23:08 +0000

248 lines

John Heumann

Post-processing after refinement with solvent flattening?

John Heumann

Fri, 9 Nov 2018 06:18:16 +0000

42 lines

Jose Miguel de la Rosa Trevin

Defects file in Relion motion correction

Jose Miguel de la Rosa Trevin

Mon, 12 Nov 2018 10:40:24 +0100

45 lines

Question about "Pre-read all images" option

Jose Miguel de la Rosa Trevin

Mon, 12 Nov 2018 10:45:35 +0100

69 lines

Jose Miguel de la Rosa Trevin

Mon, 12 Nov 2018 13:08:10 +0100

196 lines

Jose Miguel de la Rosa Trevin

Mon, 12 Nov 2018 15:37:38 +0100

128 lines

Joseph Atherton

Joseph Atherton

Thu, 8 Nov 2018 12:57:29 +0000

105 lines

Re: Backprojector::set2DSlice%%ERROR: Dimension of the data array should be 2 or 3 Relion-2.1

Joseph Atherton

Fri, 9 Nov 2018 14:39:57 +0000

582 lines

Joshua Lobo

Joshua Lobo

Sun, 11 Nov 2018 12:53:55 +0000

160 lines

Re: Negative contrast in 2D and 3D class - Relion

Joshua Lobo

Wed, 14 Nov 2018 19:21:57 +0000

125 lines

Kako

Re: Backprojector::set2DSlice%%ERROR: Dimension of the data array should be 2 or 3 Relion-2.1

Kako

Sun, 11 Nov 2018 23:58:02 +0000

270 lines

Karen McIntyre - UKRI STFC

Early bird registration and standard student bursary deadline approaches - closing date Sunday 18th November

Karen McIntyre - UKRI STFC

Fri, 2 Nov 2018 09:50:00 +0000

557 lines

FW: Registration still open for CCP4 Study Weekend 2019

Karen McIntyre - UKRI STFC

Fri, 23 Nov 2018 09:53:04 +0000

711 lines

Katerina Toropova

relion job no.1000 (v2.1 and 3.0)

Katerina Toropova

Thu, 15 Nov 2018 13:54:20 +0000

24 lines

Khoshouei, Maryam

Re: multibody refinement out put

Khoshouei, Maryam

Wed, 21 Nov 2018 14:19:31 +0000

197 lines

Kristina Djinovic Carugo

Professorship in Advanced Microscopy and Cellular Dynamics/Cryo-Electron Microscopy

Kristina Djinovic Carugo

Wed, 21 Nov 2018 07:31:01 +0100

780 lines

Lu Gan

RELION-3 / mpiicc binaries?

Lu Gan

Fri, 23 Nov 2018 19:33:29 +0800

70 lines

Lumley, Emily

CompBioMed Webinar #6: Innovations on medical student training

Lumley, Emily

Wed, 21 Nov 2018 10:53:13 +0000

21138 lines

Maia De Oliveira, Taiana

Postdoctoral

Maia De Oliveira, Taiana

Wed, 28 Nov 2018 17:29:12 +0000

211 lines

Minglei Zhao

Re: multibody refinement out put

Minglei Zhao

Thu, 8 Nov 2018 01:57:03 -0500

95 lines

Mohinder Pal

Mohinder Pal

Wed, 21 Nov 2018 14:46:21 +0100

100 lines

Naman Shah

Processing data collected with K3 camera

Naman Shah

Wed, 21 Nov 2018 22:43:08 +0000

33 lines

Nicholas M I Taylor

NNF Copenhagen Bioscience PhD Programme

Nicholas M I Taylor

Thu, 8 Nov 2018 14:32:36 +0000

1248 lines

Oliver Clarke

Re: invert map for correct handedness

Oliver Clarke

Wed, 31 Oct 2018 21:07:04 -0400

245 lines

Structural biology job openings - Human Technopole Milan

Oliver Clarke

Wed, 28 Nov 2018 12:40:27 -0500

31 lines

Pablo Conesa

Problems with Bayesian Polishing

Pablo Conesa

Tue, 6 Nov 2018 08:39:15 +0100

94 lines

Paolo Swuec

EPU stalls

Paolo Swuec

Sun, 18 Nov 2018 10:30:03 +0100

91 lines

Paolo Swuec

Fri, 16 Nov 2018 17:27:41 +0100

229 lines

Problems with Training step in R3 Bayesian Polishing

Paolo Swuec

Mon, 5 Nov 2018 14:09:37 +0100

267 lines

estimated accuracy does not improve

Paolo Swuec

Tue, 13 Nov 2018 12:41:54 +0100

185 lines

Pranav Shah

Pranav Shah

Wed, 7 Nov 2018 23:13:44 -0500

65 lines

Renault, L.L.R. (Ludovic)

Videos recordings available - Second Instruct Workshop on cryo-EM best practices

Renault, L.L.R. (Ludovic)

Sun, 25 Nov 2018 10:10:23 +0000

154 lines

Renault, L.L.R.

Cryo electron microscopy scientist job opening at NeCEN (Leiden, The Netherlands)

Renault, L.L.R.

Wed, 21 Nov 2018 08:49:55 +0000

175 lines

Roman Jerala

Information on the Glacios cryoEM

Roman Jerala

Fri, 2 Nov 2018 13:03:04 +0000

468 lines

San. Nerli

Using Relion with GCTF results in segmentation fault

San. Nerli

Thu, 22 Nov 2018 15:43:06 +0000

42 lines

Sandip Basak

Postdoctoral Position in Structural Biology at Case Western Reserve University

Sandip Basak

Thu, 8 Nov 2018 03:10:04 +0000

52 lines

Santrupti Nerli

Using Relion with GCTF results in segmentation fault

Santrupti Nerli

Tue, 27 Nov 2018 15:54:02 -0800

117 lines

Sarah Smith

refinement of large particles - RELION

Sarah Smith

Tue, 13 Nov 2018 11:24:50 +0000

4368 lines

Sayan Bhakta

Re: Aligning Particles

Sayan Bhakta

Thu, 22 Nov 2018 01:44:43 +0530

182 lines

Re: Backprojector::set2DSlice%%ERROR: Dimension of the data array should be 2 or 3 Relion-2.1

Sayan Bhakta

Sun, 11 Nov 2018 19:10:02 +0530

161 lines

Re: refining structure with a domain having hinge-motion movement

Sayan Bhakta

Thu, 22 Nov 2018 02:07:10 +0530

404 lines

Shaoxia Chen

Positions in the MRC-LMB EM facility

Shaoxia Chen

Thu, 15 Nov 2018 18:29:07 +0000

93 lines

Shintaro Aibara

Shintaro Aibara

Thu, 8 Nov 2018 20:55:47 +0100

99 lines

Ryzen Threadripper 2990WX vs 2950X for Relion

Shintaro Aibara

Fri, 9 Nov 2018 21:13:11 +0100

191 lines

Shintaro Aibara

Wed, 28 Nov 2018 11:59:04 +0100

58 lines

Shu-Hao Liou

Re: 2D classification error

Shu-Hao Liou

Fri, 9 Nov 2018 22:10:22 +0000

132 lines

Shyamal Mosalaganti

Re: Backprojector::set2DSlice%%ERROR: Dimension of the data array should be 2 or 3 Relion-2.1

Shyamal Mosalaganti

Sun, 11 Nov 2018 14:04:31 +0100

157 lines

Sjors Scheres

Re: Negative contrast in 2D and 3D class - Relion

Sjors Scheres

Wed, 14 Nov 2018 23:00:50 +0100

91 lines

Sjors Scheres

Tue, 13 Nov 2018 20:34:58 -0000

90 lines

Re: relion_ctf_refine

Sjors Scheres

Tue, 27 Nov 2018 10:19:38 +0000

78 lines

Smith, Sarah

Smith, Sarah

Tue, 13 Nov 2018 22:32:20 +0000

238 lines

Smith, Sarah

Tue, 13 Nov 2018 22:32:38 +0000

327 lines

Backprojector::set2DSlice%%ERROR: Dimension of the data array should be 2 or 3 Relion-2.1

Smith, Sarah

Tue, 13 Nov 2018 22:34:35 +0000

75 lines

Somnath Dutta

Somnath Dutta

Sun, 11 Nov 2018 17:35:55 +0530

115 lines

Re: Backprojector::set2DSlice%%ERROR: Dimension of the data array should be 2 or 3 Relion-2.1

Somnath Dutta

Sun, 11 Nov 2018 18:32:33 +0530

265 lines

Re: Backprojector::set2DSlice%%ERROR: Dimension of the data array should be 2 or 3 Relion-2.1

Somnath Dutta

Sun, 11 Nov 2018 18:40:55 +0530

188 lines

Re: Backprojector::set2DSlice%%ERROR: Dimension of the data array should be 2 or 3 Relion-2.1

Somnath Dutta

Sun, 11 Nov 2018 19:14:42 +0530

191 lines

Stefano Trapani

FSC curves and Resolution

Stefano Trapani

Tue, 13 Nov 2018 12:45:22 +0100

276 lines

Stephan Tetter

Stephan Tetter

Mon, 5 Nov 2018 17:27:25 +0000

532 lines

Re: Artefact in relion unfil half-maps

Stephan Tetter

Mon, 5 Nov 2018 18:13:36 +0000

2868 lines

Susan Lea

Re: EPU stalls

Susan Lea

Sun, 18 Nov 2018 09:34:03 +0000

103 lines

Szymon W Manka

Szymon W Manka

Thu, 1 Nov 2018 14:45:21 +0000

45440 lines

Takanori Nakane

Re: 2D classification error

Takanori Nakane

Thu, 8 Nov 2018 23:22:40 +0000

73 lines

Re: Backprojector::set2DSlice%%ERROR: Dimension of the data array should be 2 or 3 Relion-2.1

Takanori Nakane

Mon, 12 Nov 2018 17:53:22 -0000

164 lines

Re: Bayesian Polishing b-factor fitting error

Takanori Nakane

Mon, 5 Nov 2018 15:43:18 -0000

470 lines

Re: Bayesian polishing in Relion 3 and MotionCorr

Takanori Nakane

Thu, 29 Nov 2018 07:59:16 +0000

39 lines

Re: Bayesian polishing unable to load micrograph error

Takanori Nakane

Thu, 1 Nov 2018 11:32:40 -0000

93 lines

Takanori Nakane

Fri, 2 Nov 2018 19:09:03 +0000

54 lines

Takanori Nakane

Fri, 2 Nov 2018 22:19:38 +0000

86 lines

Takanori Nakane

Sun, 4 Nov 2018 07:36:51 +0000

58 lines

Re: Bayesian Polishing with GPU

Takanori Nakane

Sat, 10 Nov 2018 08:18:33 +0000

90 lines

Takanori Nakane

Tue, 13 Nov 2018 03:41:08 +0000

43 lines

Re: checking the correct dose with relion 3 (or any other software)

Takanori Nakane

Thu, 22 Nov 2018 13:36:23 -0000

63 lines

Re: checking the correct dose with relion 3 (or any other software)

Takanori Nakane

Thu, 22 Nov 2018 16:15:22 -0000

86 lines

Re: Defects file in Relion motion correction

Takanori Nakane

Mon, 12 Nov 2018 10:12:06 -0000

54 lines

Re: Error no metadata star file during Bayesian polishing

Takanori Nakane

Sun, 18 Nov 2018 13:44:41 +0000

53 lines

Takanori Nakane

Mon, 5 Nov 2018 17:35:16 -0000

74 lines

Re: Motioncorr error in Relion3

Takanori Nakane

Mon, 5 Nov 2018 19:40:34 +0000

45 lines

Takanori Nakane

Wed, 28 Nov 2018 07:55:32 +0000

91 lines

Re: multibody refinement out put

Takanori Nakane

Wed, 21 Nov 2018 14:45:26 -0000

98 lines

Re: Particle Pixel values

Takanori Nakane

Thu, 15 Nov 2018 21:40:34 +0000

53 lines

Re: pixel intensities in 2D class averages

Takanori Nakane

Fri, 30 Nov 2018 19:32:47 +0000

50 lines

Re: Post-processing after refinement with solvent flattening?

Takanori Nakane

Fri, 9 Nov 2018 08:31:39 +0000

66 lines

Re: Post-processing after refinement with solvent flattening?

Takanori Nakane

Fri, 9 Nov 2018 16:39:30 -0000

144 lines

Re: Problems with Bayesian Polishing

Takanori Nakane

Fri, 16 Nov 2018 16:35:46 -0000

126 lines

Re: Problems with Bayesian Polishing

Takanori Nakane

Sun, 18 Nov 2018 13:43:27 +0000

169 lines

Takanori Nakane

Mon, 12 Nov 2018 11:03:47 -0000

64 lines

Re: relion job no.1000 (v2.1 and 3.0)

Takanori Nakane

Mon, 12 Nov 2018 14:28:36 -0000

53 lines

Re: Relion 3 bug

Takanori Nakane

Wed, 14 Nov 2018 13:01:00 -0000

45 lines

Re: Relion 3 bug

Takanori Nakane

Wed, 14 Nov 2018 15:52:08 -0000

84 lines

Takanori Nakane

Thu, 15 Nov 2018 14:08:15 -0000

40 lines

Re: Relion motioncor2 wrapper issue

Takanori Nakane

Thu, 8 Nov 2018 17:57:24 -0000

51 lines

Re: Relion-3-beta Polishing/B-factor fitting segmentation fault

Takanori Nakane

Mon, 26 Nov 2018 09:30:12 +0000

66 lines

Re: Relion3 Refine3D --pad option

Takanori Nakane

Fri, 9 Nov 2018 20:46:06 +0000

61 lines

Re: Relion3 Refine3D --pad option

Takanori Nakane

Fri, 9 Nov 2018 23:02:38 +0000

36 lines

Re: relion_image_handler issue

Takanori Nakane

Fri, 30 Nov 2018 11:21:16 -0000

62 lines

Re: relion_image_handler issue

Takanori Nakane

Fri, 30 Nov 2018 12:00:30 -0000

59 lines

Takanori Nakane

Thu, 8 Nov 2018 11:17:22 -0000

125 lines

Re: Using Relion with GCTF results in segmentation fault

Takanori Nakane

Thu, 8 Nov 2018 15:05:04 -0000

117 lines

Takanori Nakane

Wed, 28 Nov 2018 08:00:04 +0000

51 lines

Thomas Bausewein

Thomas Bausewein

Thu, 8 Nov 2018 11:13:51 +0100

115 lines

Postdoctoral Research Scientist Position

Thomas Bausewein

Fri, 9 Nov 2018 14:55:57 +0100

392 lines

Thomsen, Alex R.

Thomsen, Alex R.

Tue, 27 Nov 2018 15:35:16 +0000

2295 lines

Tom Burnley - UKRI STFC

CCP4 Study Weekend Early Bird ending

Tom Burnley - UKRI STFC

Wed, 14 Nov 2018 10:10:42 +0000

29 lines

Uhnsoo Cho

Negative contrast in 2D and 3D class - Relion

Uhnsoo Cho

Wed, 14 Nov 2018 13:10:26 -0500

989 lines

refining structure with a domain having hinge-motion movement

Uhnsoo Cho

Wed, 21 Nov 2018 10:57:27 -0500

327 lines

Xinchao Yu

Bayesian polishing unable to load micrograph error

Xinchao Yu

Thu, 1 Nov 2018 04:14:46 +0000

166 lines

Re: Bayesian polishing unable to load micrograph error

Xinchao Yu

Thu, 1 Nov 2018 16:48:00 +0000

24 lines

which symmetry to use

Xinchao Yu

Fri, 23 Nov 2018 04:47:06 +0000

1650 lines

Yehuda Halfon

AMD threadripper 2 is GPU workstation

Yehuda Halfon

Thu, 8 Nov 2018 16:27:01 +0000

50 lines

Yehuda Halfon

Thu, 8 Nov 2018 20:01:32 +0000

101 lines